annotate phenotype-gene-associations.xml @ 0:028a3ffc17b4 draft

planemo upload commit b095175f34e78ceded24a6e1da99b328f50db86d

<tool id="planteome-phenotype-gene-associations" name="Phenotype Gene Associations" version="0.1.0">
	<macros>
		<import>macros.xml</import>
	</macros>
	<expand macro="frontmatter" />
	<command><![CDATA[
curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/phenotype/$input/gene/$taxid/ids?rows=$rows&fetch_objects=true' > $output
	]]></command>
	<inputs>
		<param  name="input" type="text" format="txt" multiple="false" label="Phenotype ID (e.g. MP:0001569)" />
		<param  name="taxid" type="text" format="txt" multiple="false" label="Taxon ID (e.g. NCBITaxon:10090)" />
		<param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/>
	</inputs>
	<expand macro="outputs" />
	<tests>
		<test>
			<param name="input" value="MP:0001569"/>
			<param name="taxid" value="NCBITaxon:10090"/>
			<output name="output" file="phenotype-for-phenotype-and-taxon.json"/>
		</test>
	</tests>
	<expand macro="citations" />
</tool>