Mercurial > repos > nathandunn > biolinkplanteome
comparison bioentity-associations.xml @ 0:028a3ffc17b4 draft
planemo upload commit b095175f34e78ceded24a6e1da99b328f50db86d
| author | nathandunn |
|---|---|
| date | Fri, 23 Jun 2017 15:04:12 -0400 |
| parents | |
| children | 66ece4fd024f |
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| -1:000000000000 | 0:028a3ffc17b4 |
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| 1 <tool id="planteome-bioentity-associations" name="Bioentity Associations" version="0.1.0"> | |
| 2 <macros> | |
| 3 <import>macros.xml</import> | |
| 4 </macros> | |
| 5 <expand macro="frontmatter" /> | |
| 6 <command><![CDATA[ | |
| 7 curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/$input/associations/?rows=$rows&fetch_objects=true' > $output | |
| 8 ]]></command> | |
| 9 <inputs> | |
| 10 <param name="input" type="text" format="txt" multiple="false" label="Bioentity ID (e.g. ZFIN:ZDB-ALT-010427-8)" /> | |
| 11 <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/> | |
| 12 </inputs> | |
| 13 <expand macro="outputs" /> | |
| 14 <tests> | |
| 15 <test> | |
| 16 <param name="input" value="ZFIN:ZDB-ALT-010427-8"/> | |
| 17 <output name="output" file="associations-for-variant.json"/> | |
| 18 </test> | |
| 19 </tests> | |
| 20 <expand macro="citations" /> | |
| 21 </tool> | |
| 22 |