Mercurial > repos > nathandunn > biolinkplanteome
comparison phenotype-gene-associations.xml @ 0:028a3ffc17b4 draft
planemo upload commit b095175f34e78ceded24a6e1da99b328f50db86d
| author | nathandunn |
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| date | Fri, 23 Jun 2017 15:04:12 -0400 |
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| -1:000000000000 | 0:028a3ffc17b4 |
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| 1 <tool id="planteome-phenotype-gene-associations" name="Phenotype Gene Associations" version="0.1.0"> | |
| 2 <macros> | |
| 3 <import>macros.xml</import> | |
| 4 </macros> | |
| 5 <expand macro="frontmatter" /> | |
| 6 <command><![CDATA[ | |
| 7 curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/phenotype/$input/gene/$taxid/ids?rows=$rows&fetch_objects=true' > $output | |
| 8 ]]></command> | |
| 9 <inputs> | |
| 10 <param name="input" type="text" format="txt" multiple="false" label="Phenotype ID (e.g. MP:0001569)" /> | |
| 11 <param name="taxid" type="text" format="txt" multiple="false" label="Taxon ID (e.g. NCBITaxon:10090)" /> | |
| 12 <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/> | |
| 13 </inputs> | |
| 14 <expand macro="outputs" /> | |
| 15 <tests> | |
| 16 <test> | |
| 17 <param name="input" value="MP:0001569"/> | |
| 18 <param name="taxid" value="NCBITaxon:10090"/> | |
| 19 <output name="output" file="phenotype-for-phenotype-and-taxon.json"/> | |
| 20 </test> | |
| 21 </tests> | |
| 22 <expand macro="citations" /> | |
| 23 </tool> | |
| 24 |