Mercurial > repos > nathandunn > biolinkplanteome
comparison bioentity-associations.xml @ 1:66ece4fd024f draft default tip
planemo upload commit 20eeb677e99874173440a365f2db04e315e7ebed
author | nathandunn |
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date | Wed, 28 Jun 2017 10:27:08 -0400 |
parents | 028a3ffc17b4 |
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0:028a3ffc17b4 | 1:66ece4fd024f |
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2 <macros> | 2 <macros> |
3 <import>macros.xml</import> | 3 <import>macros.xml</import> |
4 </macros> | 4 </macros> |
5 <expand macro="frontmatter" /> | 5 <expand macro="frontmatter" /> |
6 <command><![CDATA[ | 6 <command><![CDATA[ |
7 curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/$input/associations/?rows=$rows&fetch_objects=true' > $output | 7 curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/api/bioentity/$input/associations/?rows=$rows&fetch_objects=true' > $output |
8 ]]></command> | 8 ]]></command> |
9 <inputs> | 9 <inputs> |
10 <param name="input" type="text" format="txt" multiple="false" label="Bioentity ID (e.g. ZFIN:ZDB-ALT-010427-8)" /> | 10 <param name="input" type="text" format="txt" multiple="false" label="Bioentity ID (e.g. EnsemblPlants:GRMZM2G061969_T01)" /> |
11 <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/> | 11 <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/> |
12 </inputs> | 12 </inputs> |
13 <expand macro="outputs" /> | 13 <expand macro="outputs" /> |
14 <tests> | 14 <tests> |
15 <test> | 15 <test> |
16 <param name="input" value="ZFIN:ZDB-ALT-010427-8"/> | 16 <param name="input" value="EnsemblPlants:GRMZM2G061969_T01"/> |
17 <output name="output" file="associations-for-variant.json"/> | 17 <output name="output" file="associations-for-variant.json"/> |
18 </test> | 18 </test> |
19 </tests> | 19 </tests> |
20 <expand macro="citations" /> | 20 <expand macro="citations" /> |
21 </tool> | 21 </tool> |