comparison phenotype-gene-associations.xml @ 1:66ece4fd024f draft default tip

planemo upload commit 20eeb677e99874173440a365f2db04e315e7ebed
author nathandunn
date Wed, 28 Jun 2017 10:27:08 -0400
parents 028a3ffc17b4
children
comparison
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0:028a3ffc17b4 1:66ece4fd024f
1 <tool id="planteome-phenotype-gene-associations" name="Phenotype Gene Associations" version="0.1.0">
2 <macros>
3 <import>macros.xml</import>
4 </macros>
5 <expand macro="frontmatter" />
6 <command><![CDATA[
7 curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/phenotype/$input/gene/$taxid/ids?rows=$rows&fetch_objects=true' > $output
8 ]]></command>
9 <inputs>
10 <param name="input" type="text" format="txt" multiple="false" label="Phenotype ID (e.g. MP:0001569)" />
11 <param name="taxid" type="text" format="txt" multiple="false" label="Taxon ID (e.g. NCBITaxon:10090)" />
12 <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/>
13 </inputs>
14 <expand macro="outputs" />
15 <tests>
16 <test>
17 <param name="input" value="MP:0001569"/>
18 <param name="taxid" value="NCBITaxon:10090"/>
19 <output name="output" file="phenotype-for-phenotype-and-taxon.json"/>
20 </test>
21 </tests>
22 <expand macro="citations" />
23 </tool>
24