Mercurial > repos > nathandunn > biolinkplanteome
diff phenotype-gene-associations.xml @ 0:028a3ffc17b4 draft
planemo upload commit b095175f34e78ceded24a6e1da99b328f50db86d
| author | nathandunn |
|---|---|
| date | Fri, 23 Jun 2017 15:04:12 -0400 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/phenotype-gene-associations.xml Fri Jun 23 15:04:12 2017 -0400 @@ -0,0 +1,24 @@ +<tool id="planteome-phenotype-gene-associations" name="Phenotype Gene Associations" version="0.1.0"> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="frontmatter" /> + <command><![CDATA[ +curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/phenotype/$input/gene/$taxid/ids?rows=$rows&fetch_objects=true' > $output + ]]></command> + <inputs> + <param name="input" type="text" format="txt" multiple="false" label="Phenotype ID (e.g. MP:0001569)" /> + <param name="taxid" type="text" format="txt" multiple="false" label="Taxon ID (e.g. NCBITaxon:10090)" /> + <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/> + </inputs> + <expand macro="outputs" /> + <tests> + <test> + <param name="input" value="MP:0001569"/> + <param name="taxid" value="NCBITaxon:10090"/> + <output name="output" file="phenotype-for-phenotype-and-taxon.json"/> + </test> + </tests> + <expand macro="citations" /> +</tool> +