diff associations.xml @ 1:66ece4fd024f draft default tip

planemo upload commit 20eeb677e99874173440a365f2db04e315e7ebed

--- a/associations.xml	Fri Jun 23 15:04:12 2017 -0400
+++ b/associations.xml	Wed Jun 28 10:27:08 2017 -0400
@@ -5,18 +5,18 @@
     <expand macro="frontmatter" />
     <command><![CDATA[
 	#if $type == 'find'
-        curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/association/$type/?rows=$rows&fetch_objects=true&subject=$subject' > $output
+        curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/api/association/$type/?rows=$rows&fetch_objects=true&subject=$subject' > $output
 	#else if $type == 'from'
-        curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/association/$type/$subject?rows=$rows&fetch_objects=true' > $output
+        curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/api/association/$type/$subject?rows=$rows&fetch_objects=true' > $output
 	#else if $type == 'to'
-        curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/association/$type/$object?rows=$rows&fetch_objects=true' > $output
+        curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/api/association/$type/$object?rows=$rows&fetch_objects=true' > $output
 	#else if $type == 'between'
-        curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/association/$type/$subject/$object?rows=$rows&fetch_objects=true' > $output
+        curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/api/association/$type/$subject/$object?rows=$rows&fetch_objects=true' > $output
 	#end if
 	]]></command>
     <inputs>
-        <param name="subject" type="text" format="txt" multiple="false" label="Subject"/>
-        <param name="object" type="text" format="txt" multiple="false" label="Object"/>
+        <param name="subject" type="text" format="txt" multiple="false" label="Subject (e.g., EnsemblPlants:GRMZM2G061969_T01)"/>
+        <param name="object" type="text" format="txt" multiple="false" label="Object (e.g., GO:0005783)"/>
         <param name="type" type="select" multiple="false" display="radio" label="Type">
             <option value="find">Find (subject)</option>
             <option value="from">From (subject)</option>
@@ -28,23 +28,23 @@
     <expand macro="outputs" />
     <tests>
         <test>
-            <param name="subject" value="NCBIGene:84570"/>
+            <param name="subject" value="EnsemblPlants:GRMZM2G061969_T01"/>
             <param name="type" value="find"/>
             <output name="output" file="find-associations-for-subject.json"/>
         </test>
         <test>
-            <param name="subject" value="NCBIGene:84570"/>
+            <param name="subject" value="EnsemblPlants:GRMZM2G061969_T01"/>
             <param name="type" value="from"/>
             <output name="output" file="from-associations-for-subject.json"/>
         </test>
         <test>
-            <param name="object" value="MP:0013765"/>
+            <param name="object" value="GO:0005783"/>
             <param name="type" value="to"/>
             <output name="output" file="to-associations-for-object.json"/>
         </test>
         <test>
-            <param name="subject" value="MGI:1342287"/>
-            <param name="object" value="MP:0013765"/>
+            <param name="subject" value="EnsemblPlants:GRMZM2G061969_T01"/>
+            <param name="object" value="GO:0005783"/>
             <param name="type" value="between"/>
             <output name="output" file="between-associations.json"/>
         </test>