Mercurial > repos > nathandunn > biolinkplanteome
diff gene-associations.xml @ 1:66ece4fd024f draft default tip
planemo upload commit 20eeb677e99874173440a365f2db04e315e7ebed
| author | nathandunn |
|---|---|
| date | Wed, 28 Jun 2017 10:27:08 -0400 |
| parents | 028a3ffc17b4 |
| children |
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--- a/gene-associations.xml Fri Jun 23 15:04:12 2017 -0400 +++ b/gene-associations.xml Wed Jun 28 10:27:08 2017 -0400 @@ -4,43 +4,43 @@ </macros> <expand macro="frontmatter" /> <command><![CDATA[ -curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/gene/$input/$association/?rows=$rows&fetch_objects=true' > $output +curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/api/bioentity/gene/$input/$association/?rows=$rows&fetch_objects=true' > $output ]]></command> <inputs> - <param name="input" type="text" format="txt" multiple="false" label="Gene"/> + <param name="input" type="text" format="txt" multiple="false" label="Gene (e.g. MaizeGDB:9024907)"/> <param name="association" type="select" multiple="false" display="radio" label="Type"> - <option value="diseases">Diseases (e.g,. NCBIGene:4750, Orphanet:173505)</option> - <option value="function">Function (e.g,. NCBIGene:4750, Orphanet:173505)</option> - <option value="homologs">Homologs (e.g,. NCBIGene:4750, Orphanet:173505)</option> - <option value="interactions">Interactions (e.g,. NCBIGene:4750, Orphanet:173505)</option> - <option value="phenotypes">Phenotypes (e.g,. NCBIGene:4750, Orphanet:173505)</option> + <option value="diseases">Diseases</option> + <option value="function">Function</option> + <!--<option value="homologs">Homologs</option>--> + <!--<option value="interactions">Interactions</option>--> + <option value="phenotypes">Phenotypes</option> </param> <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/> </inputs> <expand macro="outputs" /> <tests> <test> - <param name="input" value="NCBIGene:4750"/> + <param name="input" value="MaizeGDB:9024907"/> <param name="association" value="diseases"/> <output name="output" file="diseases-for-gene.json"/> </test> <test> - <param name="input" value="NCBIGene:4750"/> + <param name="input" value="MaizeGDB:9024907"/> <param name="association" value="function"/> <output name="output" file="function-for-gene.json"/> </test> - <test> - <param name="input" value="NCBIGene:4750"/> - <param name="association" value="homologs"/> - <output name="output" file="homologs-for-gene.json"/> - </test> + <!--<test>--> + <!--<param name="input" value="MaizeGDB:9024907"/>--> + <!--<param name="association" value="homologs"/>--> + <!--<output name="output" file="homologs-for-gene.json"/>--> + <!--</test>--> + <!--<test>--> + <!--<param name="input" value="MaizeGDB:9024907"/>--> + <!--<param name="association" value="interactions"/>--> + <!--<output name="output" file="interactions-for-gene.json"/>--> + <!--</test>--> <test> - <param name="input" value="NCBIGene:4750"/> - <param name="association" value="interactions"/> - <output name="output" file="interactions-for-gene.json"/> - </test> - <test> - <param name="input" value="NCBIGene:4750"/> + <param name="input" value="MaizeGDB:9024907"/> <param name="association" value="phenotypes"/> <output name="output" file="phenotypes-for-gene.json"/> </test>