Mercurial > repos > nathandunn > biolinkplanteome

diff genotype-associations.xml @ 1:66ece4fd024f draft default tip

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planemo upload commit 20eeb677e99874173440a365f2db04e315e7ebed
author nathandunn
date Wed, 28 Jun 2017 10:27:08 -0400
parents 028a3ffc17b4
children
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--- a/genotype-associations.xml	Fri Jun 23 15:04:12 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,43 +0,0 @@
-<tool id="planteome-genotype-associations" name="Genotype Associations" version="0.1.0">
-    <macros>
-        <import>macros.xml</import>
-    </macros>
-    <expand macro="frontmatter" />
-	<command><![CDATA[
-curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/genotype/$input/$association/?rows=$rows&fetch_objects=true' > $output
-	]]></command>
-	<inputs>
-	    <param  name="input" type="text" format="txt" multiple="false" label="Genotype (e.g. dbSNPIndividual:12141)" />
-		<param  name="association" type="select" multiple="false" display="radio" label="Type">
-			<option value="diseases">Diseases </option>
-			<option value="genes">Genes</option>
-			<option value="genotypes">Genotypes</option>
-			<option value="phenotypes">Phenotypes</option>
-		</param>
-        <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/>
-    </inputs>
-    <expand macro="outputs" />
-	 <tests>
-		 <test>
-			 <param name="input" value="dbSNPIndividual:12141"/>
-			 <param name="association" value="diseases"/>
-			 <output name="output" file="diseases-for-genotype.json"/>
-		 </test>
-         <test>
-             <param name="input" value="dbSNPIndividual:12141"/>
-             <param name="association" value="genes"/>
-             <output name="output" file="genes-for-genotype.json"/>
-         </test>
-         <test>
-             <param name="input" value="dbSNPIndividual:12141"/>
-             <param name="association" value="genotypes"/>
-             <output name="output" file="genotypes-for-genotype.json"/>
-         </test>
-         <test>
-             <param name="input" value="dbSNPIndividual:12141"/>
-             <param name="association" value="phenotypes"/>
-             <output name="output" file="phenotypes-for-genotype.json"/>
-         </test>
-	 </tests>
-    <expand macro="citations" />
-</tool>