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view bioentity-associations.xml @ 1:66ece4fd024f draft default tip

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planemo upload commit 20eeb677e99874173440a365f2db04e315e7ebed
author nathandunn
date Wed, 28 Jun 2017 10:27:08 -0400
parents 028a3ffc17b4
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<tool id="planteome-bioentity-associations" name="Bioentity Associations" version="0.1.0">
	<macros>
		<import>macros.xml</import>
	</macros>
	<expand macro="frontmatter" />
	<command><![CDATA[
curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/api/bioentity/$input/associations/?rows=$rows&fetch_objects=true' > $output
	]]></command>
	<inputs>
		<param  name="input" type="text" format="txt" multiple="false" label="Bioentity ID (e.g. EnsemblPlants:GRMZM2G061969_T01)" />
		<param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/>
	</inputs>
	<expand macro="outputs" />
	<tests>
		<test>
			<param name="input" value="EnsemblPlants:GRMZM2G061969_T01"/>
			<output name="output" file="associations-for-variant.json"/>
		</test>
	</tests>
	<expand macro="citations" />
</tool>