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annotate test.txt @ 7:61d8060bf2ed draft

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planemo upload commit cc498cdcd54060998f80018b8f2dc92345adc414
author nathandunn
date Mon, 22 Aug 2016 12:41:24 -0400
parents 850bb90bd667
children
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850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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1 NCBIGene:37853 Mlp60A NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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2 NCBIGene:39002 Prm NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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3 NCBIGene:627 BDNF NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19276553 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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4 NCBIGene:3630 insulin NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19276553 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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5 NCBIGene:2944 GSTM1 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:17449559 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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6 NCBIGene:33824 Gpdh NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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7 NCBIGene:4137 microtubule associated protein tau NCBITaxon:9606 Homo sapiens OMIM:260540 Parkinson-Dementia Syndrome ECO:0000220|ECO:0000322 sequencing assay evidence|imported manually asserted information used in automatic assertion http://data.monarchinitiative.org/ttl/orphanet.ttl|http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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8 NCBIGene:4729 NDUFV2 NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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9 NCBIGene:1565 CYP2D6 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:15174030|PMID:14991823 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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10 NCBIGene:3482 insulin like growth factor 2 receptor NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19276553 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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11 NCBIGene:4842 nitric oxide synthase 1 (neuronal) NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:26383258 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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12 NCBIGene:5243 ATP binding cassette subfamily B member 1 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:20558393 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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13 NCBIGene:5071 parkin RBR E3 ubiquitin protein ligase NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:15882845|PMID:19946270|PMID:25149416|PMID:22043175|PMID:16573651|PMID:12588799|PMID:22841634|PMID:24582596|PMID:15198987|PMID:17010972|PMID:23628791 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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14 NCBIGene:4129 MAOB NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:21318773 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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15 NCBIGene:6622 SNCA NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl inferred
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16 NCBIGene:43497 Obp99b NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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17 NCBIGene:4137 microtubule associated protein tau NCBITaxon:9606 Homo sapiens Orphanet:240112 Progressive supranuclear palsy - progressive non fluent aphasia ECO:0000322 imported manually asserted information used in automatic assertion http://data.monarchinitiative.org/ttl/orphanet.ttl inferred
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18 NCBIGene:31826 rdgA NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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19 NCBIGene:5071 parkin RBR E3 ubiquitin protein ligase NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl inferred
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20 NCBIGene:120892 leucine-rich repeat kinase 2 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19915575|PMID:23628791|PMID:25149416|PMID:23017109|PMID:20205471|PMID:22043175|PMID:23472874|PMID:19915576|PMID:17388990 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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21 NCBIGene:2244 FGB NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:23233872 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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22 NCBIGene:6315 ATXN8OS NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
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23 NCBIGene:6622 SNCA NCBITaxon:9606 Homo sapiens OMIM:260300 autosomal recessive early-onset Parkinson disease 15 ECO:0000322 imported manually asserted information used in automatic assertion http://data.monarchinitiative.org/ttl/orphanet.ttl inferred
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24 NCBIGene:2670 glial fibrillary acidic protein NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19276553 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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25 NCBIGene:7345 UCHL1 NCBITaxon:9606 Homo sapiens Orphanet:2828 Young-onset Parkinson disease http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
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26 NCBIGene:3569 interleukin 6 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:21318773 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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27 NCBIGene:4128 MAOA NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:17449559 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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28 NCBIGene:2747 GLUD2 NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
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29 NCBIGene:4803 nerve growth factor (beta polypeptide) NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19276553 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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30 NCBIGene:199 AIF1 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19276553 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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31 NCBIGene:6622 SNCA NCBITaxon:9606 Homo sapiens OMIM:168601 autosomal dominant Parkinson disease 1 ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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32 NCBIGene:4287 ATXN3 NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
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33 NCBIGene:203228 chromosome 9 open reading frame 72 NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl inferred
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34 NCBIGene:4566 TRNK NCBITaxon:9606 Homo sapiens OMIM:556500 Parkinson Disease, Mitochondrial http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
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35 NCBIGene:6531 solute carrier family 6 (neurotransmitter transporter), member 3 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:16112329|PMID:19590691|PMID:16963468|PMID:9763484 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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36 NCBIGene:6311 ATXN2 NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl inferred
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37 NCBIGene:53564 retinin NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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38 NCBIGene:26281 fibroblast growth factor 20 NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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39 NCBIGene:2203 FBP1 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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40 NCBIGene:7345 UCHL1 NCBITaxon:9606 Homo sapiens OMIM:613643 Parkinson Disease 5, Autosomal Dominant, Susceptibility to ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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41 NCBIGene:4217 mitogen-activated protein kinase kinase kinase 5 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:21815648 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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42 NCBIGene:3077 HFE NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:16824219 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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43 NCBIGene:6622 SNCA NCBITaxon:9606 Homo sapiens OMIM:605543 Parkinson Disease 4, Autosomal Dominant ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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44 NCBIGene:120892 leucine-rich repeat kinase 2 NCBITaxon:9606 Homo sapiens OMIM:607060 autosomal dominant Parkinson disease 8 ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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45 NCBIGene:4929 NR4A2 NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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46 NCBIGene:7345 UCHL1 NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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47 NCBIGene:55532 SLC30A10 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:25149416 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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48 NCBIGene:3313 HSPA9 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:16565515 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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49 NCBIGene:4137 microtubule associated protein tau NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:20711177|PMID:19915575 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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50 NCBIGene:5071 parkin RBR E3 ubiquitin protein ligase NCBITaxon:9606 Homo sapiens Orphanet:2828 Young-onset Parkinson disease ECO:0000322 imported manually asserted information used in automatic assertion http://data.monarchinitiative.org/ttl/orphanet.ttl|http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
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51 NCBIGene:3643 INSR NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19276553 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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52 NCBIGene:2950 glutathione S-transferase pi 1 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:17190945|PMID:23721876 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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53 NCBIGene:27429 HTRA2 NCBITaxon:9606 Homo sapiens OMIM:610297 Parkinson Disease 13, Autosomal Dominant, Susceptibility to ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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54 NCBIGene:23400 ATP13A2 NCBITaxon:9606 Homo sapiens OMIM:606693 Kufor-Rakeb syndrome ECO:0000033|ECO:0000220|ECO:0000322|ECO:0000220 traceable author statement|sequencing assay evidence|imported manually asserted information used in automatic assertion|sequencing assay evidence PMID:22768177|PMID:22022275|PMID:22847264 http://data.monarchinitiative.org/ttl/orphanet.ttl|http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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55 NCBIGene:1728 NQO1 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:17188257 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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56 NCBIGene:126 ADH1C NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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57 NCBIGene:55737 VPS35 retromer complex component NCBITaxon:9606 Homo sapiens OMIM:614203 Parkinson Disease 17 ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
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58 NCBIGene:11315 parkinson protein 7 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:23037695|PMID:20800516|PMID:17010972|PMID:25149416|PMID:20423725|PMID:22898350|PMID:22043175|PMID:23792957|PMID:15784737 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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59 NCBIGene:26058 GRB10 interacting GYF protein 2 NCBITaxon:9606 Homo sapiens OMIM:607688 Parkinson Disease 11, Autosomal Dominant, Susceptibility to ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
60 NCBIGene:38508 Cpr64Aa NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
61 NCBIGene:3162 HMOX1 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:21318773 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
62 NCBIGene:6622 SNCA NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:20664293|PMID:12151787|PMID:22355530|PMID:17690948|PMID:25149416|PMID:12732244|PMID:21245015|PMID:25064009|PMID:11535288|PMID:18353766|PMID:22166454|PMID:20711177|PMID:17131421|PMID:12885775|PMID:18322262|PMID:21892157|PMID:22043175|PMID:22185909|PMID:15099020|PMID:14535945|PMID:19915575|PMID:18841091|PMID:19915576|PMID:22110584 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
63 MGI:1857323 Up NCBITaxon:10090 Mus musculus DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
64 NCBIGene:43829 ATPsynbeta NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
65 NCBIGene:32133 Hsc70-3 NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
66 NCBIGene:23317 DNAJC13 NCBITaxon:9606 Homo sapiens OMIM:616361 Parkinson Disease 21 ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
67 NCBIGene:55737 VPS35 retromer complex component NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:25149416 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
68 NCBIGene:6908 TATA-box binding protein NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
69 NCBIGene:6202 RPS8 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
70 NCBIGene:1621 dopamine beta-hydroxylase (dopamine beta-monooxygenase) NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
71 NCBIGene:4729 NDUFV2 NCBITaxon:9606 Homo sapiens OMIM:556500 Parkinson Disease, Mitochondrial http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
72 NCBIGene:27429 HTRA2 NCBITaxon:9606 Homo sapiens Orphanet:2828 Young-onset Parkinson disease http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
73 NCBIGene:683 BST1 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19915576 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
74 NCBIGene:3480 insulin like growth factor 1 receptor NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19276553 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
75 NCBIGene:5071 parkin RBR E3 ubiquitin protein ligase NCBITaxon:9606 Homo sapiens OMIM:600116 Parkinson Disease 2, Autosomal Recessive Juvenile ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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diff changeset
76 NCBIGene:100129518 LOC100129518 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:17188257|PMID:18353766|PMID:25279756 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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diff changeset
77 NCBIGene:6147 ribosomal protein L23a NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
78 NCBIGene:627 BDNF NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
79 NCBIGene:4540 MT-ND5 NCBITaxon:9606 Homo sapiens OMIM:605909 Parkinson Disease 6, Autosomal Recessive Early-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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diff changeset
80 NCBIGene:4535 ND1 NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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diff changeset
81 NCBIGene:43690 chp NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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diff changeset
82 NCBIGene:23317 DNAJC13 NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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diff changeset
83 NCBIGene:38418 kst NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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diff changeset
84 NCBIGene:4541 MT-ND6 NCBITaxon:9606 Homo sapiens OMIM:605909 Parkinson Disease 6, Autosomal Recessive Early-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
85 NCBIGene:6531 solute carrier family 6 (neurotransmitter transporter), member 3 NCBITaxon:9606 Homo sapiens OMIM:613135 Parkinsonism-Dystonia, Infantile ECO:0000322|ECO:0000220 imported manually asserted information used in automatic assertion|sequencing assay evidence http://data.monarchinitiative.org/ttl/orphanet.ttl|http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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diff changeset
86 NCBIGene:3481 IGF2 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19276553 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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diff changeset
87 NCBIGene:4576 TRNT NCBITaxon:9606 Homo sapiens OMIM:556500 Parkinson Disease, Mitochondrial http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
88 NCBIGene:1815 dopamine receptor D4 NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
89 NCBIGene:39826 fax NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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diff changeset
90 NCBIGene:1571 CYP2E1 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:16510128 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
91 NCBIGene:120892 leucine-rich repeat kinase 2 NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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diff changeset
92 NCBIGene:9829 DnaJ heat shock protein family (Hsp40) member C6 NCBITaxon:9606 Homo sapiens OMIM:615528 Parkinson Disease 19, Juvenile-Onset ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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diff changeset
93 NCBIGene:9627 synuclein alpha interacting protein NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
94 NCBIGene:11315 parkinson protein 7 NCBITaxon:9606 Homo sapiens Orphanet:2828 Young-onset Parkinson disease ECO:0000322 imported manually asserted information used in automatic assertion http://data.monarchinitiative.org/ttl/orphanet.ttl|http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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diff changeset
95 NCBIGene:2629 GBA NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:20947659|PMID:25064009 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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diff changeset
96 NCBIGene:7124 tumor necrosis factor NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:21318773 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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diff changeset
97 NCBIGene:9045 RPL14 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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diff changeset
98 NCBIGene:33721 Rtnl1 NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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diff changeset
99 NCBIGene:4137 microtubule associated protein tau NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
100 NCBIGene:4137 microtubule associated protein tau NCBITaxon:9606 Homo sapiens Orphanet:240094 Progressive supranuclear palsy - pure akinesia with gait freezing ECO:0000322 imported manually asserted information used in automatic assertion http://data.monarchinitiative.org/ttl/orphanet.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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101 NCBIGene:497258 BDNF-AS NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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102 NCBIGene:4099 MAG NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19276553 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
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103 NCBIGene:8867 SYNJ1 NCBITaxon:9606 Homo sapiens OMIM:615530 Parkinson Disease 20, Early-Onset ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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104 NCBIGene:6128 ribosomal protein L6 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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105 NCBIGene:4540 MT-ND5 NCBITaxon:9606 Homo sapiens Orphanet:2828 Young-onset Parkinson disease http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
nathandunn
parents:
diff changeset
106 NCBIGene:65018 PINK1 NCBITaxon:9606 Homo sapiens Orphanet:2828 Young-onset Parkinson disease ECO:0000322 imported manually asserted information used in automatic assertion http://data.monarchinitiative.org/ttl/orphanet.ttl|http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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107 NCBIGene:1981 eukaryotic translation initiation factor 4 gamma, 1 NCBITaxon:9606 Homo sapiens OMIM:614251 Parkinson Disease 18, Autosomal Dominant, Susceptibility to ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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108 NCBIGene:2629 GBA NCBITaxon:9606 Homo sapiens OMIM:168600 Parkinson Disease, Late-Onset ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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109 NCBIGene:8398 phospholipase A2 group VI NCBITaxon:9606 Homo sapiens OMIM:612953 Parkinson Disease 14, Autosomal Recessive ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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110 NCBIGene:6571 solute carrier family 18 (vesicular monoamine transporter), member 2 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:16112329 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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111 NCBIGene:23400 ATP13A2 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:25149416|PMID:23628791 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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112 NCBIGene:25793 F-box protein 7 NCBITaxon:9606 Homo sapiens OMIM:260300 autosomal recessive early-onset Parkinson disease 15 ECO:0000322|ECO:0000033|ECO:0000220 imported manually asserted information used in automatic assertion|traceable author statement|sequencing assay evidence PMID:25029497 http://data.monarchinitiative.org/ttl/orphanet.ttl|http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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113 NCBIGene:65018 PINK1 NCBITaxon:9606 Homo sapiens OMIM:605909 Parkinson Disease 6, Autosomal Recessive Early-Onset ECO:0000033|ECO:0000220 traceable author statement|sequencing assay evidence PMID:24475098|PMID:21421046 http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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114 NCBIGene:3122 HLA-DRA NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:20711177 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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115 NCBIGene:2580 GAK NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:20711177 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
850bb90bd667 planemo upload commit b529f45bf9fecbac1457a65b6b81e3b95200fced
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116 NCBIGene:11315 parkinson protein 7 NCBITaxon:9606 Homo sapiens OMIM:105500 Amyotrophic Lateral Sclerosis-Parkinsonism/Dementia Complex 1 ECO:0000323 imported automatically asserted information used in automatic assertion http://data.monarchinitiative.org/ttl/orphanet.ttl inferred
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117 NCBIGene:44643 Cnx99A NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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118 NCBIGene:2941 GSTA4 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:16510128 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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119 NCBIGene:4541 MT-ND6 NCBITaxon:9606 Homo sapiens Orphanet:2828 Young-onset Parkinson disease http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
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120 NCBIGene:33883 Cpr NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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121 NCBIGene:126 ADH1C NCBITaxon:9606 Homo sapiens OMIM:556500 Parkinson Disease, Mitochondrial http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
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122 NCBIGene:4571 MT-TP NCBITaxon:9606 Homo sapiens OMIM:556500 Parkinson Disease, Mitochondrial http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl inferred
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123 NCBIGene:4137 microtubule associated protein tau NCBITaxon:9606 Homo sapiens Orphanet:240103 Progressive supranuclear palsy - corticobasal syndrome ECO:0000322 imported manually asserted information used in automatic assertion http://data.monarchinitiative.org/ttl/orphanet.ttl inferred
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124 NCBIGene:6888 TALDO1 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:23233872 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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125 NCBIGene:1906 endothelin 1 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19276553 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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126 NCBIGene:11315 parkinson protein 7 NCBITaxon:9606 Homo sapiens OMIM:606324 Parkinson Disease 7, Autosomal Recessive Early-Onset ECO:0000220 sequencing assay evidence http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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127 NCBIGene:38990 Cpr66D NCBITaxon:7227 Drosophila melanogaster DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:18353766 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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128 NCBIGene:1356 ceruloplasmin (ferroxidase) NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:19159062|PMID:25758665 http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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129 NCBIGene:54822 TRPM7 NCBITaxon:9606 Homo sapiens OMIM:105500 Amyotrophic Lateral Sclerosis-Parkinsonism/Dementia Complex 1 ECO:0000220|ECO:0000323 sequencing assay evidence|imported automatically asserted information used in automatic assertion http://data.monarchinitiative.org/ttl/orphanet.ttl|http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred
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130 NCBIGene:65018 PINK1 NCBITaxon:9606 Homo sapiens DOID:14330 Parkinson's disease ECO:0000033 traceable author statement PMID:22043175|PMID:17010972|PMID:25149416|PMID:21366594|PMID:24374061 http://data.monarchinitiative.org/ttl/ctd.ttl inferred