Mercurial > repos > nathandunn > monarchinitiative
comparison README.rst @ 8:15016fee2bc4 draft
planemo upload commit 00e0e60deed9cc2ef83d47a3182cd6c84b8f5b41
author | nathandunn |
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date | Mon, 22 Aug 2016 12:53:55 -0400 |
parents | 61d8060bf2ed |
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7:61d8060bf2ed | 8:15016fee2bc4 |
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8 .. .. image:: demo.png | 8 .. .. image:: demo.png |
9 | 9 |
10 .. .. image:: arguments.png | 10 .. .. image:: arguments.png |
11 | 11 |
12 | 12 |
13 # To Update | 13 ========= |
14 To Update | |
15 ========= | |
14 | 16 |
15 planemo test | 17 :: |
16 | 18 |
17 If one of them fails, then we have to make sure that the different tests are just data being updated, but not an error: | 19 planemo test |
18 | 20 |
19 | 21 |
20 should be non-zero. | 22 If one of them fails, then we have to make sure that the different tests are just data being updated, but not an error. |
21 | 23 |
22 For each xml test do: | 24 For each xml test do: |
23 | 25 |
26 :: | |
27 | |
24 planemo test monarch-phenotypes-for-disease.xml --update_test_data | 28 planemo test monarch-phenotypes-for-disease.xml --update_test_data |
25 | 29 |
26 which will update the test data | 30 which will update the test data. |
27 | 31 |
28 If the test data is non-empty: | 32 If the test data is non-empty: |
33 | |
34 :: | |
29 | 35 |
30 git status | grep modified | cut -c14-1000 | xargs wc -l | 36 git status | grep modified | cut -c14-1000 | xargs wc -l |
31 | 37 |
32 then commit. | 38 then commit. |
33 | 39 |
34 | 40 ------------------------------ |
35 # Send to the Toolset | 41 Sending update to the Toolshed |
42 ------------------------------ | |
36 | 43 |
37 Using this reference for publishing: http://planemo.readthedocs.io/en/latest/publishing.html | 44 Using this reference for publishing: http://planemo.readthedocs.io/en/latest/publishing.html |
45 | |
46 :: | |
38 | 47 |
39 planemo shed_lint --tools | 48 planemo shed_lint --tools |
40 | 49 |
41 planemo shed_diff --shed_target toolshed | 50 planemo shed_diff --shed_target toolshed |
42 | 51 |