Mercurial > repos > nathandunn > monarchinitiative
comparison README.rst @ 7:61d8060bf2ed draft
planemo upload commit cc498cdcd54060998f80018b8f2dc92345adc414
author | nathandunn |
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date | Mon, 22 Aug 2016 12:41:24 -0400 |
parents | 4be31c7908af |
children | 15016fee2bc4 |
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8 .. .. image:: demo.png | 8 .. .. image:: demo.png |
9 | 9 |
10 .. .. image:: arguments.png | 10 .. .. image:: arguments.png |
11 | 11 |
12 | 12 |
13 # To Update | |
14 | |
15 planemo test | |
16 | |
17 If one of them fails, then we have to make sure that the different tests are just data being updated, but not an error: | |
18 | |
19 | |
20 should be non-zero. | |
21 | |
22 For each xml test do: | |
23 | |
24 planemo test monarch-phenotypes-for-disease.xml --update_test_data | |
25 | |
26 which will update the test data | |
27 | |
28 If the test data is non-empty: | |
29 | |
30 git status | grep modified | cut -c14-1000 | xargs wc -l | |
31 | |
32 then commit. | |
33 | |
34 | |
35 # Send to the Toolset | |
36 | |
37 Using this reference for publishing: http://planemo.readthedocs.io/en/latest/publishing.html | |
38 | |
39 planemo shed_lint --tools | |
40 | |
41 planemo shed_diff --shed_target toolshed | |
42 | |
43 planemo shed_update --check_diff --shed_target toolshed | |
44 | |
45 planemo shed_test --shed_target toolshed | |
46 | |
47 | |
48 |