Mercurial > repos > nathandunn > monarchinitiative
comparison monarch-phenopackets.xml @ 7:61d8060bf2ed draft
planemo upload commit cc498cdcd54060998f80018b8f2dc92345adc414
| author | nathandunn |
|---|---|
| date | Mon, 22 Aug 2016 12:41:24 -0400 |
| parents | 307ec8cd152e |
| children |
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| 6:307ec8cd152e | 7:61d8060bf2ed |
|---|---|
| 35 <param name="input1" value="phenotype.tsv"/> | 35 <param name="input1" value="phenotype.tsv"/> |
| 36 <param name="conditional1" value="OR"/> | 36 <param name="conditional1" value="OR"/> |
| 37 <!--<output name="output1" file="phenotypes-for-variant.json"/>--> | 37 <!--<output name="output1" file="phenotypes-for-variant.json"/>--> |
| 38 <output name="output1"> | 38 <output name="output1"> |
| 39 <assert_contents> | 39 <assert_contents> |
| 40 <has_text text='phenopacket":{"phenotype_profile":[{"entity":"ClinVarVariant:217207"'/> | 40 <has_text text='phenopacket":{"phenotype_profile":[{"entity":"'/> |
| 41 </assert_contents> | 41 </assert_contents> |
| 42 </output> | 42 </output> |
| 43 </test> | 43 </test> |
| 44 <test> | 44 <test> |
| 45 <param name="input1" value="2-phenotypes.tsv"/> | 45 <param name="input1" value="2-phenotypes.tsv"/> |
| 46 <param name="conditional1" value="AND"/> | 46 <param name="conditional1" value="AND"/> |
| 47 <!--<output name="output1" file="phenotypes-for-variants-intersection.json"/>--> | 47 <!--<output name="output1" file="phenotypes-for-variants-intersection.json"/>--> |
| 48 <output name="output1"> | 48 <output name="output1"> |
| 49 <assert_contents> | 49 <assert_contents> |
| 50 <has_text text='phenopacket":{"phenotype_profile":[{"entity":"ClinVarVariant:217207"'/> | 50 <has_text text='{"phenopacket":{"phenotype_profile":[{"entity":"'/> |
| 51 </assert_contents> | 51 </assert_contents> |
| 52 </output> | 52 </output> |
| 53 </test> | 53 </test> |
| 54 <test> | 54 <test> |
| 55 <param name="input1" value="2-phenotypes.tsv"/> | 55 <param name="input1" value="2-phenotypes.tsv"/> |
| 56 <param name="conditional1" value="OR"/> | 56 <param name="conditional1" value="OR"/> |
| 57 <!--<output name="output1" file="phenotypes-for-variants-union.json"/>--> | 57 <!--<output name="output1" file="phenotypes-for-variants-union.json"/>--> |
| 58 <output name="output1"> | 58 <output name="output1"> |
| 59 <assert_contents> | 59 <assert_contents> |
| 60 <has_text text='phenopacket":{"phenotype_profile":[{"entity":"ClinVarVariant:217207"'/> | 60 <has_text text='{"phenopacket":{"phenotype_profile":[{"entity":"'/> |
| 61 </assert_contents> | 61 </assert_contents> |
| 62 </output> | 62 </output> |
| 63 </test> | 63 </test> |
| 64 </tests> | 64 </tests> |
| 65 <help><![CDATA[ | 65 <help><![CDATA[ |