Mercurial > repos > nathandunn > monarchinitiative

comparison test-data/homologues-for-gene.tsv @ 7:61d8060bf2ed draft

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planemo upload commit cc498cdcd54060998f80018b8f2dc92345adc414
author nathandunn
date Mon, 22 Aug 2016 12:41:24 -0400
parents 850bb90bd667
children 5fa1f0ca69cc
comparison
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6:307ec8cd152e 7:61d8060bf2ed
1 NCBIGene:25801 GCA NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
2 NCBIGene:388743 CAPN8 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
3 NCBIGene:10016 PDCD6 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
4 NCBIGene:716360 CAPN10 NCBITaxon:9544 Macaca mulatta RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
5 NCBIGene:841981 DEK1 NCBITaxon:3702 Arabidopsis thaliana RO:HOM0000017 in orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
6 NCBIGene:100379827 capn10 NCBITaxon:8364 Xenopus (Silurana) tropicalis RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
7 NCBIGene:825 CAPN3 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
8 NCBIGene:789674 CAPN10 NCBITaxon:9913 Bos taurus RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
9 NCBIGene:824 CAPN2 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
10 NCBIGene:79747 ADGB NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
11 MGI:1344392 Capn10 NCBITaxon:10090 Mus musculus RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
12 NCBIGene:726 CAPN5 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
13 NCBIGene:823 CAPN1 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
14 NCBIGene:92291 CAPN13 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
1 NCBIGene:607311 CAPN10 NCBITaxon:9615 Canis lupus familiaris RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct 15 NCBIGene:607311 CAPN10 NCBITaxon:9615 Canis lupus familiaris RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
2 NCBIGene:84290 CAPNS2 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct 16 NCBIGene:84290 CAPNS2 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
3 WormBase:WBGene00006606 tra-3 NCBITaxon:6239 Caenorhabditis elegans RO:HOM0000017 in orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct 17 NCBIGene:6650 CAPN15 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
4 NCBIGene:6650 calpain 15 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
5 NCBIGene:11131 CAPN11 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct 18 NCBIGene:11131 CAPN11 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
6 NCBIGene:79747 ADGB NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct 19 NCBIGene:178385 tra-3 NCBITaxon:6239 Caenorhabditis elegans RO:HOM0000017 in orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
7 MGI:1344392 Capn10 NCBITaxon:10090 Mus musculus RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
8 NCBIGene:63834 Capn10 NCBITaxon:10116 Rattus norvegicus RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct 20 NCBIGene:63834 Capn10 NCBITaxon:10116 Rattus norvegicus RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
9 NCBIGene:147968 calpain 12 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
10 NCBIGene:23473 CAPN7 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct 21 NCBIGene:23473 CAPN7 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
22 NCBIGene:147968 CAPN12 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
11 NCBIGene:440854 CAPN14 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct 23 NCBIGene:440854 CAPN14 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
24 NCBIGene:827 CAPN6 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
12 NCBIGene:10753 CAPN9 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct 25 NCBIGene:10753 CAPN9 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
13 NCBIGene:570311 capn10 NCBITaxon:7955 Danio rerio RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000031|ECO:0000080 protein BLAST evidence used in manual assertion|phylogenetic evidence ZFIN:ZDB-PUB-030905-1 http://data.monarchinitiative.org/ttl/panther.ttl|http://data.monarchinitiative.org/ttl/zfin.ttl direct 26 NCBIGene:570311 capn10 NCBITaxon:7955 Danio rerio RO:HOM0000017 in orthology relationship with ECO:0000080|ECO:0000031 phylogenetic evidence|protein BLAST evidence used in manual assertion ZFIN:ZDB-PUB-030905-1 http://data.monarchinitiative.org/ttl/panther.ttl|http://data.monarchinitiative.org/ttl/zfin.ttl direct
14 NCBIGene:827 CAPN6 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
15 NCBIGene:553115 PEF1 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct 27 NCBIGene:553115 PEF1 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
16 NCBIGene:826 CAPNS1 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct 28 NCBIGene:826 CAPNS1 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
29 NCBIGene:6717 SRI NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
17 NCBIGene:100022544 CAPN10 NCBITaxon:13616 Monodelphis domestica RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct 30 NCBIGene:100022544 CAPN10 NCBITaxon:13616 Monodelphis domestica RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
18 NCBIGene:6717 SRI NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
19 NCBIGene:10016 PDCD6 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
20 NCBIGene:388743 CAPN8 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
21 NCBIGene:25801 GCA NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
22 NCBIGene:824 CAPN2 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
23 NCBIGene:716360 CAPN10 NCBITaxon:9544 Macaca mulatta RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
24 NCBIGene:841981 DEK1 NCBITaxon:3702 Arabidopsis thaliana RO:HOM0000017 in orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
25 NCBIGene:789674 CAPN10 NCBITaxon:9913 Bos taurus RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
26 NCBIGene:825 calpain 3 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
27 NCBIGene:100379827 capn10 NCBITaxon:8364 Xenopus tropicalis RO:HOM0000020 in 1 to 1 orthology relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
28 NCBIGene:726 CAPN5 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
29 NCBIGene:823 calpain 1, (mu/I) large subunit NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct
30 NCBIGene:92291 CAPN13 NCBITaxon:9606 Homo sapiens RO:HOM0000011 in paralogy relationship with ECO:0000080 phylogenetic evidence http://data.monarchinitiative.org/ttl/panther.ttl direct