Mercurial > repos > nathandunn > monarchinitiative
comparison test-data/pathways-for-diseases-intersection.tsv @ 7:61d8060bf2ed draft
planemo upload commit cc498cdcd54060998f80018b8f2dc92345adc414
author | nathandunn |
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date | Mon, 22 Aug 2016 12:41:24 -0400 |
parents | 3107c58d5c85 |
children | 5fa1f0ca69cc |
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1 KEGG-path:ko05010 Alzheimer's disease RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 1 KEGG-path:map05152 Tuberculosis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
2 KEGG-path:ko04010 MAPK signaling pathway RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 2 REACT:111217 Metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213|ECO:0000213 combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion PMID:24058526|PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
3 http://www.reactome.org/PathwayBrowser/#REACT_71 Gene Expression RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 3 KEGG-path:map00040 Pentose and glucuronate interconversions RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
4 KEGG-path:ko00250 Alanine, aspartate and glutamate metabolism RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 4 KEGG-path:map00053 Ascorbate and aldarate metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
5 KEGG-path:ko04964 Proximal tubule bicarbonate reclamation RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 5 REACT:R-HSA-1989781 PPARA activates gene expression RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213|ECO:0000304 combinatorial evidence used in automatic assertion|traceable author statement used in manual assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/reactome.ttl inferred |
6 KEGG-path:ko04142 Lysosome RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 6 KEGG-path:map04976 Bile secretion RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:24058526 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
7 KEGG-path:ko05218 Melanoma RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 7 KEGG-path:map02010 ABC transporters RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:24058526 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
8 KEGG-path:ko00511 Other glycan degradation RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 8 KEGG-path:map00982 Drug metabolism - cytochrome P450 RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
9 KEGG-path:ko01100 Metabolic pathways RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 9 KEGG-path:map05323 Rheumatoid arthritis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
10 KEGG-path:ko05016 Huntington's disease RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 10 KEGG-path:map04966 Collecting duct acid secretion RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
11 KEGG-path:ko00910 Nitrogen metabolism RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 11 REACT:111102 Signal Transduction RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213|ECO:0000213|ECO:0000213 combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion PMID:23406172|PMID:25670933|PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
12 KEGG-path:ko00330 Arginine and proline metabolism RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 12 KEGG-path:map00860 Porphyrin and chlorophyll metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
13 http://www.reactome.org/PathwayBrowser/#REACT_6900 Immune System RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 13 KEGG-path:map04080 Neuroactive ligand-receptor interaction RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:24058526 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
14 KEGG-path:ko03022 Basal transcription factors RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 14 KEGG-path:map00514 Other types of O-glycan biosynthesis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
15 KEGG-path:ko00471 D-Glutamine and D-glutamate metabolism RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 15 REACT:116125 Disease RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
16 KEGG-path:ko00190 Oxidative phosphorylation RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 16 KEGG-path:map00830 Retinol metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
17 KEGG-path:ko05200 Pathways in cancer RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 17 KEGG-path:map00140 Steroid hormone biosynthesis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
18 KEGG-path:ko05012 Parkinson's disease RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 18 KEGG-path:map00983 Drug metabolism - other enzymes RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
19 KEGG-path:ko00600 Sphingolipid metabolism RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 19 KEGG-path:map05120 Epithelial cell signaling in Helicobacter pylori infection RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
20 http://www.reactome.org/PathwayBrowser/#REACT_578 Apoptosis RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 20 KEGG-path:map05110 Vibrio cholerae infection RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
21 KEGG-path:ko04810 Regulation of actin cytoskeleton RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 21 KEGG-path:map00190 Oxidative phosphorylation RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
22 http://www.reactome.org/PathwayBrowser/#REACT_111217 Metabolism RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 22 KEGG-path:map04142 Lysosome RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
23 KEGG-path:ko04722 Neurotrophin signaling pathway RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 23 KEGG-path:map00500 Starch and sucrose metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
24 http://www.reactome.org/PathwayBrowser/#REACT_111102 Signal Transduction RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 24 KEGG-path:map04740 Olfactory transduction RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:23406172 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
25 http://www.reactome.org/PathwayBrowser/#REACT_1788 Transcription RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 25 KEGG-path:map04145 Phagosome RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
26 KEGG-path:ko04141 Protein processing in endoplasmic reticulum RO:0002331 involved in OMIM:168600 Parkinson Disease, Late-Onset http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | 26 REACT:15518 Transmembrane transport of small molecules RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |
27 KEGG-path:map04144 Endocytosis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:25670933 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | |
28 KEGG-path:map01100 Metabolic pathways RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213|ECO:0000213 combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion PMID:22558097|PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | |
29 KEGG-path:map00980 Metabolism of xenobiotics by cytochrome P450 RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred | |
30 REACT:71 Gene Expression RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:24058526 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred |