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diff test-data/pathways-for-diseases-intersection.tsv @ 9:5fa1f0ca69cc draft default tip

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planemo upload commit f59eaefa6c10f425809c7cb6d2e3df6164fa3a15
author nathandunn
date Sun, 25 Sep 2016 21:59:32 -0400
parents 61d8060bf2ed
children
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--- a/test-data/pathways-for-diseases-intersection.tsv	Mon Aug 22 12:53:55 2016 -0400
+++ b/test-data/pathways-for-diseases-intersection.tsv	Sun Sep 25 21:59:32 2016 -0400
@@ -1,30 +1,30 @@
-KEGG-path:map05152	Tuberculosis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-REACT:111217	Metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213|ECO:0000213	combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion	PMID:24058526|PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map00040	Pentose and glucuronate interconversions	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map00053	Ascorbate and aldarate metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-REACT:R-HSA-1989781	PPARA activates gene expression	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213|ECO:0000304	combinatorial evidence used in automatic assertion|traceable author statement used in manual assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/reactome.ttl	inferred
-KEGG-path:map04976	Bile secretion	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:24058526	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map02010	ABC transporters	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:24058526	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map00982	Drug metabolism - cytochrome P450	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map05323	Rheumatoid arthritis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map04966	Collecting duct acid secretion	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-REACT:111102	Signal Transduction	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213|ECO:0000213|ECO:0000213	combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion	PMID:23406172|PMID:25670933|PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00140	Steroid hormone biosynthesis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00830	Retinol metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+REACT:116125	Disease	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00514	Other types of O-glycan biosynthesis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
 KEGG-path:map00860	Porphyrin and chlorophyll metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+REACT:111102	Signal Transduction	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213|ECO:0000213|ECO:0000213	combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion	PMID:21326311|PMID:23406172|PMID:25670933	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
 KEGG-path:map04080	Neuroactive ligand-receptor interaction	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:24058526	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map00514	Other types of O-glycan biosynthesis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-REACT:116125	Disease	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map00830	Retinol metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map00140	Steroid hormone biosynthesis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map00983	Drug metabolism - other enzymes	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map05120	Epithelial cell signaling in Helicobacter pylori infection	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map05110	Vibrio cholerae infection	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map00190	Oxidative phosphorylation	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map04142	Lysosome	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map00500	Starch and sucrose metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map05323	Rheumatoid arthritis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00982	Drug metabolism - cytochrome P450	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map02010	ABC transporters	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:24058526	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map04976	Bile secretion	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:24058526	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map04966	Collecting duct acid secretion	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+REACT:111217	Metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213|ECO:0000213	combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion	PMID:24058526|PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map05152	Tuberculosis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+REACT:R-HSA-1989781	PPARA activates gene expression	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000304|ECO:0000213	traceable author statement used in manual assertion|combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/reactome.ttl	inferred
+KEGG-path:map00053	Ascorbate and aldarate metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00040	Pentose and glucuronate interconversions	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+REACT:71	Gene Expression	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:24058526	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00980	Metabolism of xenobiotics by cytochrome P450	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map01100	Metabolic pathways	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213|ECO:0000213	combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion	PMID:21326311|PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map04144	Endocytosis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:25670933	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
 KEGG-path:map04740	Olfactory transduction	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:23406172	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
 KEGG-path:map04145	Phagosome	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00500	Starch and sucrose metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map04142	Lysosome	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
 REACT:15518	Transmembrane transport of small molecules	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map04144	Endocytosis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:25670933	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map01100	Metabolic pathways	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213|ECO:0000213	combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion	PMID:22558097|PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:map00980	Metabolism of xenobiotics by cytochrome P450	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-REACT:71	Gene Expression	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:24058526	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map05120	Epithelial cell signaling in Helicobacter pylori infection	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00983	Drug metabolism - other enzymes	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00190	Oxidative phosphorylation	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map05110	Vibrio cholerae infection	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred