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diff test-data/genes-for-2-diseases-intersection.tsv @ 7:61d8060bf2ed draft

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planemo upload commit cc498cdcd54060998f80018b8f2dc92345adc414
author nathandunn
date Mon, 22 Aug 2016 12:41:24 -0400
parents 850bb90bd667
children 5fa1f0ca69cc
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--- a/test-data/genes-for-2-diseases-intersection.tsv	Wed Jun 29 14:17:39 2016 -0400
+++ b/test-data/genes-for-2-diseases-intersection.tsv	Mon Aug 22 12:41:24 2016 -0400
@@ -1,23 +1,18 @@
-NCBIGene:4729	NDUFV2	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-NCBIGene:6622	SNCA	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl	inferred
-NCBIGene:5071	parkin RBR E3 ubiquitin protein ligase	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl	inferred
-NCBIGene:6315	ATXN8OS	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl	inferred
-NCBIGene:2747	GLUD2	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl	inferred
-NCBIGene:4287	ATXN3	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl	inferred
-NCBIGene:203228	chromosome 9 open reading frame 72	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl	inferred
-NCBIGene:6311	ATXN2	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset	ECO:0000220	sequencing assay evidence		http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl	inferred
-NCBIGene:26281	fibroblast growth factor 20	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-NCBIGene:4929	NR4A2	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+NCBIGene:126	ADH1C	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset	ECO:0000220	sequencing assay evidence		http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+NCBIGene:2747	GLUD2	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset			PMID:19826450	http://data.monarchinitiative.org/ttl/clinvar.ttl	inferred
+NCBIGene:5071	PARK2	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl	inferred
 NCBIGene:7345	UCHL1	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-NCBIGene:126	ADH1C	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset	ECO:0000220	sequencing assay evidence		http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-NCBIGene:6908	TATA-box binding protein	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset	ECO:0000220	sequencing assay evidence		http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-NCBIGene:1621	dopamine beta-hydroxylase (dopamine beta-monooxygenase)	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-NCBIGene:627	BDNF	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl	inferred
-NCBIGene:4535	ND1	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl	inferred
-NCBIGene:23317	DNAJC13	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl	inferred
-NCBIGene:1815	dopamine receptor D4	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-NCBIGene:120892	leucine-rich repeat kinase 2	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl	inferred
-NCBIGene:9627	synuclein alpha interacting protein	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-NCBIGene:4137	microtubule associated protein tau	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset	ECO:0000220	sequencing assay evidence		http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-NCBIGene:497258	BDNF-AS	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl	inferred
-NCBIGene:2629	GBA	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset	ECO:0000220	sequencing assay evidence		http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl	inferred
+NCBIGene:4929	NR4A2	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+NCBIGene:1621	DBH	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+NCBIGene:4729	NDUFV2	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+NCBIGene:26281	FGF20	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+NCBIGene:6311	ATXN2	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset	ECO:0000220	sequencing assay evidence		http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl	inferred
+NCBIGene:9627	SNCAIP	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+NCBIGene:120892	LRRK2	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset			PMID:27111571	http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl	inferred
+NCBIGene:6622	SNCA	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl	inferred
+NCBIGene:6908	TBP	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset	ECO:0000220	sequencing assay evidence		http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+NCBIGene:4137	MAPT	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset	ECO:0000220	sequencing assay evidence		http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+NCBIGene:2629	GBA	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset	ECO:0000220	sequencing assay evidence		http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/coriell.ttl|http://data.monarchinitiative.org/ttl/kegg.ttl	inferred
+NCBIGene:23317	DNAJC13	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset			PMID:24218364	http://data.monarchinitiative.org/ttl/clinvar.ttl	inferred
+NCBIGene:4535	ND1	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset			PMID:7624338	http://data.monarchinitiative.org/ttl/clinvar.ttl	inferred
+NCBIGene:1815	DRD4	NCBITaxon:9606	Homo sapiens			OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/ctd.ttl	inferred