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diff test-data/homologues-for-gene.tsv @ 7:61d8060bf2ed draft

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planemo upload commit cc498cdcd54060998f80018b8f2dc92345adc414
author nathandunn
date Mon, 22 Aug 2016 12:41:24 -0400
parents 850bb90bd667
children 5fa1f0ca69cc
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line diff
--- a/test-data/homologues-for-gene.tsv	Wed Jun 29 14:17:39 2016 -0400
+++ b/test-data/homologues-for-gene.tsv	Mon Aug 22 12:41:24 2016 -0400
@@ -1,30 +1,30 @@
-NCBIGene:607311	CAPN10	NCBITaxon:9615	Canis lupus familiaris	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:84290	CAPNS2	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-WormBase:WBGene00006606	tra-3	NCBITaxon:6239	Caenorhabditis elegans	RO:HOM0000017	in orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:6650	calpain 15	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:11131	CAPN11	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:25801	GCA	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:388743	CAPN8	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:10016	PDCD6	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:716360	CAPN10	NCBITaxon:9544	Macaca mulatta	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:841981	DEK1	NCBITaxon:3702	Arabidopsis thaliana	RO:HOM0000017	in orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:100379827	capn10	NCBITaxon:8364	Xenopus (Silurana) tropicalis	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:825	CAPN3	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:789674	CAPN10	NCBITaxon:9913	Bos taurus	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:824	CAPN2	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
 NCBIGene:79747	ADGB	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
 MGI:1344392	Capn10	NCBITaxon:10090	Mus musculus	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:726	CAPN5	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:823	CAPN1	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:92291	CAPN13	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:607311	CAPN10	NCBITaxon:9615	Canis lupus familiaris	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:84290	CAPNS2	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:6650	CAPN15	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:11131	CAPN11	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:178385	tra-3	NCBITaxon:6239	Caenorhabditis elegans	RO:HOM0000017	in orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
 NCBIGene:63834	Capn10	NCBITaxon:10116	Rattus norvegicus	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:147968	calpain 12	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
 NCBIGene:23473	CAPN7	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:147968	CAPN12	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
 NCBIGene:440854	CAPN14	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:827	CAPN6	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
 NCBIGene:10753	CAPN9	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:570311	capn10	NCBITaxon:7955	Danio rerio	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000031|ECO:0000080	protein BLAST evidence used in manual assertion|phylogenetic evidence	ZFIN:ZDB-PUB-030905-1	http://data.monarchinitiative.org/ttl/panther.ttl|http://data.monarchinitiative.org/ttl/zfin.ttl	direct
-NCBIGene:827	CAPN6	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:570311	capn10	NCBITaxon:7955	Danio rerio	RO:HOM0000017	in orthology relationship with	ECO:0000080|ECO:0000031	phylogenetic evidence|protein BLAST evidence used in manual assertion	ZFIN:ZDB-PUB-030905-1	http://data.monarchinitiative.org/ttl/panther.ttl|http://data.monarchinitiative.org/ttl/zfin.ttl	direct
 NCBIGene:553115	PEF1	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
 NCBIGene:826	CAPNS1	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
+NCBIGene:6717	SRI	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
 NCBIGene:100022544	CAPN10	NCBITaxon:13616	Monodelphis domestica	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:6717	SRI	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:10016	PDCD6	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:388743	CAPN8	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:25801	GCA	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:824	CAPN2	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:716360	CAPN10	NCBITaxon:9544	Macaca mulatta	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:841981	DEK1	NCBITaxon:3702	Arabidopsis thaliana	RO:HOM0000017	in orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:789674	CAPN10	NCBITaxon:9913	Bos taurus	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:825	calpain 3	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:100379827	capn10	NCBITaxon:8364	Xenopus tropicalis	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:726	CAPN5	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:823	calpain 1, (mu/I) large subunit	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
-NCBIGene:92291	CAPN13	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct