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diff test-data/pathways-for-diseases-intersection.tsv @ 7:61d8060bf2ed draft

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planemo upload commit cc498cdcd54060998f80018b8f2dc92345adc414
author nathandunn
date Mon, 22 Aug 2016 12:41:24 -0400
parents 3107c58d5c85
children 5fa1f0ca69cc
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--- a/test-data/pathways-for-diseases-intersection.tsv	Wed Jun 29 14:17:39 2016 -0400
+++ b/test-data/pathways-for-diseases-intersection.tsv	Mon Aug 22 12:41:24 2016 -0400
@@ -1,26 +1,30 @@
-KEGG-path:ko05010	Alzheimer's disease	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko04010	MAPK signaling pathway	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-http://www.reactome.org/PathwayBrowser/#REACT_71	Gene Expression	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko00250	Alanine, aspartate and glutamate metabolism	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko04964	Proximal tubule bicarbonate reclamation	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko04142	Lysosome	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko05218	Melanoma	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko00511	Other glycan degradation	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko01100	Metabolic pathways	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko05016	Huntington's disease	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko00910	Nitrogen metabolism	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko00330	Arginine and proline metabolism	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-http://www.reactome.org/PathwayBrowser/#REACT_6900	Immune System	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko03022	Basal transcription factors	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko00471	D-Glutamine and D-glutamate metabolism	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko00190	Oxidative phosphorylation	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko05200	Pathways in cancer	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko05012	Parkinson's disease	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko00600	Sphingolipid metabolism	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-http://www.reactome.org/PathwayBrowser/#REACT_578	Apoptosis	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko04810	Regulation of actin cytoskeleton	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-http://www.reactome.org/PathwayBrowser/#REACT_111217	Metabolism	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko04722	Neurotrophin signaling pathway	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-http://www.reactome.org/PathwayBrowser/#REACT_111102	Signal Transduction	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-http://www.reactome.org/PathwayBrowser/#REACT_1788	Transcription	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
-KEGG-path:ko04141	Protein processing in endoplasmic reticulum	RO:0002331	involved in	OMIM:168600	Parkinson Disease, Late-Onset				http://data.monarchinitiative.org/ttl/omim.ttl|http://data.monarchinitiative.org/ttl/clinvar.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map05152	Tuberculosis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+REACT:111217	Metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213|ECO:0000213	combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion	PMID:24058526|PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00040	Pentose and glucuronate interconversions	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00053	Ascorbate and aldarate metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+REACT:R-HSA-1989781	PPARA activates gene expression	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213|ECO:0000304	combinatorial evidence used in automatic assertion|traceable author statement used in manual assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/reactome.ttl	inferred
+KEGG-path:map04976	Bile secretion	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:24058526	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map02010	ABC transporters	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:24058526	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00982	Drug metabolism - cytochrome P450	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map05323	Rheumatoid arthritis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map04966	Collecting duct acid secretion	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+REACT:111102	Signal Transduction	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213|ECO:0000213|ECO:0000213	combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion	PMID:23406172|PMID:25670933|PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00860	Porphyrin and chlorophyll metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map04080	Neuroactive ligand-receptor interaction	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:24058526	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00514	Other types of O-glycan biosynthesis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+REACT:116125	Disease	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00830	Retinol metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00140	Steroid hormone biosynthesis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00983	Drug metabolism - other enzymes	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map05120	Epithelial cell signaling in Helicobacter pylori infection	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map05110	Vibrio cholerae infection	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00190	Oxidative phosphorylation	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map04142	Lysosome	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00500	Starch and sucrose metabolism	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map04740	Olfactory transduction	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:23406172	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map04145	Phagosome	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+REACT:15518	Transmembrane transport of small molecules	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map04144	Endocytosis	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:25670933	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map01100	Metabolic pathways	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213|ECO:0000213	combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion	PMID:22558097|PMID:21326311	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+KEGG-path:map00980	Metabolism of xenobiotics by cytochrome P450	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:22558097	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred
+REACT:71	Gene Expression	RO:0002331	involved in	OMIM:603903	Sickle Cell Anemia	ECO:0000213	combinatorial evidence used in automatic assertion	PMID:24058526	http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl	inferred