Mercurial > repos > nathandunn > monarchinitiative
diff test-data/pathways-for-disease.tsv @ 9:5fa1f0ca69cc draft default tip
planemo upload commit f59eaefa6c10f425809c7cb6d2e3df6164fa3a15
| author | nathandunn |
|---|---|
| date | Sun, 25 Sep 2016 21:59:32 -0400 |
| parents | 61d8060bf2ed |
| children |
line wrap: on
line diff
--- a/test-data/pathways-for-disease.tsv Mon Aug 22 12:53:55 2016 -0400 +++ b/test-data/pathways-for-disease.tsv Sun Sep 25 21:59:32 2016 -0400 @@ -1,30 +1,30 @@ -KEGG-path:map05152 Tuberculosis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -REACT:111217 Metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213|ECO:0000213 combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion PMID:24058526|PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map00040 Pentose and glucuronate interconversions RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map00053 Ascorbate and aldarate metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -REACT:R-HSA-1989781 PPARA activates gene expression RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213|ECO:0000304 combinatorial evidence used in automatic assertion|traceable author statement used in manual assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/reactome.ttl inferred -KEGG-path:map04976 Bile secretion RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:24058526 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map02010 ABC transporters RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:24058526 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map00982 Drug metabolism - cytochrome P450 RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map05323 Rheumatoid arthritis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map04966 Collecting duct acid secretion RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -REACT:111102 Signal Transduction RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213|ECO:0000213|ECO:0000213 combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion PMID:23406172|PMID:25670933|PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map00140 Steroid hormone biosynthesis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map00830 Retinol metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +REACT:116125 Disease RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map00514 Other types of O-glycan biosynthesis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred KEGG-path:map00860 Porphyrin and chlorophyll metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +REACT:111102 Signal Transduction RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213|ECO:0000213|ECO:0000213 combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion PMID:21326311|PMID:23406172|PMID:25670933 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred KEGG-path:map04080 Neuroactive ligand-receptor interaction RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:24058526 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map00514 Other types of O-glycan biosynthesis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -REACT:116125 Disease RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map00830 Retinol metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map00140 Steroid hormone biosynthesis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map00983 Drug metabolism - other enzymes RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map05120 Epithelial cell signaling in Helicobacter pylori infection RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map05110 Vibrio cholerae infection RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map00190 Oxidative phosphorylation RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map04142 Lysosome RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map00500 Starch and sucrose metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map05323 Rheumatoid arthritis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map00982 Drug metabolism - cytochrome P450 RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map02010 ABC transporters RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:24058526 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map04976 Bile secretion RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:24058526 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map04966 Collecting duct acid secretion RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +REACT:111217 Metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213|ECO:0000213 combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion PMID:24058526|PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map05152 Tuberculosis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +REACT:R-HSA-1989781 PPARA activates gene expression RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000304|ECO:0000213 traceable author statement used in manual assertion|combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/reactome.ttl inferred +KEGG-path:map00053 Ascorbate and aldarate metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map00040 Pentose and glucuronate interconversions RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +REACT:71 Gene Expression RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:24058526 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map00980 Metabolism of xenobiotics by cytochrome P450 RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map01100 Metabolic pathways RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213|ECO:0000213 combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion PMID:21326311|PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map04144 Endocytosis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:25670933 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred KEGG-path:map04740 Olfactory transduction RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:23406172 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred KEGG-path:map04145 Phagosome RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map00500 Starch and sucrose metabolism RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map04142 Lysosome RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred REACT:15518 Transmembrane transport of small molecules RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map04144 Endocytosis RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:25670933 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map01100 Metabolic pathways RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213|ECO:0000213 combinatorial evidence used in automatic assertion|combinatorial evidence used in automatic assertion PMID:22558097|PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -KEGG-path:map00980 Metabolism of xenobiotics by cytochrome P450 RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred -REACT:71 Gene Expression RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:24058526 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map05120 Epithelial cell signaling in Helicobacter pylori infection RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map00983 Drug metabolism - other enzymes RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:22558097 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map00190 Oxidative phosphorylation RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred +KEGG-path:map05110 Vibrio cholerae infection RO:0002331 involved in OMIM:603903 Sickle Cell Anemia ECO:0000213 combinatorial evidence used in automatic assertion PMID:21326311 http://data.monarchinitiative.org/ttl/gwascatalog.ttl|http://data.monarchinitiative.org/ttl/ctd.ttl inferred