Mercurial > repos > nathandunn > monarchinitiative

view test-data/homologues-for-genes-union.tsv @ 1:7ae426ca9054 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit b538202f822ef9ce7af7f1ff2867dd1455b83725
author nathandunn
date Sun, 26 Jun 2016 16:24:15 -0400
parents 850bb90bd667
children 61d8060bf2ed
line wrap: on
line source

NCBIGene:607311	CAPN10	NCBITaxon:9615	Canis lupus familiaris	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:84290	CAPNS2	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
ZFIN:ZDB-GENE-030131-5206	capns1b	NCBITaxon:7955	Danio rerio	RO:HOM0000017	in orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
WormBase:WBGene00006606	tra-3	NCBITaxon:6239	Caenorhabditis elegans	RO:HOM0000017	in orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:6650	calpain 15	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:10753	CAPN9	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:388743	CAPN8	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
MGI:1916793	Capns2	NCBITaxon:10090	Mus musculus	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:11131	CAPN11	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:79747	ADGB	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
MGI:1344392	Capn10	NCBITaxon:10090	Mus musculus	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:6717	SRI	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:825	calpain 3	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:79747	ADGB	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:823	calpain 1, (mu/I) large subunit	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080|ECO:0000079	phylogenetic evidence|affinity chromatography evidence	PMID:26186194	http://data.monarchinitiative.org/ttl/panther.ttl|http://data.monarchinitiative.org/ttl/biogrid.ttl	direct
NCBIGene:6650	calpain 15	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:63834	Capn10	NCBITaxon:10116	Rattus norvegicus	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
ZFIN:ZDB-GENE-030113-3	capns1a	NCBITaxon:7955	Danio rerio	RO:HOM0000017	in orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:147968	calpain 12	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:553115	PEF1	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:23473	CAPN7	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:147968	calpain 12	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:440854	CAPN14	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:548915	capns2	NCBITaxon:8364	Xenopus tropicalis	RO:HOM0000017	in orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:10753	CAPN9	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:570311	capn10	NCBITaxon:7955	Danio rerio	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000031|ECO:0000080	protein BLAST evidence used in manual assertion|phylogenetic evidence	ZFIN:ZDB-PUB-030905-1	http://data.monarchinitiative.org/ttl/panther.ttl|http://data.monarchinitiative.org/ttl/zfin.ttl	direct
NCBIGene:827	CAPN6	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:553115	PEF1	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:830295	AT5G04170	NCBITaxon:3702	Arabidopsis thaliana	RO:HOM0000017	in orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:826	CAPNS1	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:100022544	CAPN10	NCBITaxon:13616	Monodelphis domestica	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
WormBase:WBGene00019770	M04F3.4	NCBITaxon:6239	Caenorhabditis elegans	RO:HOM0000017	in orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:827	CAPN6	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:6717	SRI	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:25801	GCA	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:440854	CAPN14	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:10016	PDCD6	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:388743	CAPN8	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:826	CAPNS1	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080|ECO:0000079	phylogenetic evidence|affinity chromatography evidence	PMID:26186194	http://data.monarchinitiative.org/ttl/panther.ttl|http://data.monarchinitiative.org/ttl/biogrid.ttl	direct
NCBIGene:25801	GCA	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:824	CAPN2	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:92291	CAPN13	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:716360	CAPN10	NCBITaxon:9544	Macaca mulatta	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:11131	CAPN11	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:841981	DEK1	NCBITaxon:3702	Arabidopsis thaliana	RO:HOM0000017	in orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:820192	AT3G10300	NCBITaxon:3702	Arabidopsis thaliana	RO:HOM0000017	in orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:726	CAPN5	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:23473	CAPN7	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:789674	CAPN10	NCBITaxon:9913	Bos taurus	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:825	calpain 3	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:100145791	capns1	NCBITaxon:8364	Xenopus tropicalis	RO:HOM0000017	in orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:11132	CAPN10	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:100379827	capn10	NCBITaxon:8364	Xenopus tropicalis	RO:HOM0000020	in 1 to 1 orthology relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:824	CAPN2	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:726	CAPN5	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:823	calpain 1, (mu/I) large subunit	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:92291	CAPN13	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct
NCBIGene:10016	PDCD6	NCBITaxon:9606	Homo sapiens	RO:HOM0000011	in paralogy relationship with	ECO:0000080	phylogenetic evidence		http://data.monarchinitiative.org/ttl/panther.ttl	direct