annotate ngsplot_galaxytoolshed_v1.0/tool_dependencies.xml @ 3:cb7670846918 draft

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<?xml version="1.0"?>
<tool_dependency>
    <package name="ngsplot" version="2.47.1">
        <install version="1.0">
            <actions>
                <action type="shell_command">tar -xzvf ngsplot-2.47.1.tar.gz</action>
                <action type="move_directory_files">
                    <source_directory>ngsplot</source_directory>
                    <destination_directory>$INSTALL_DIR/ngsplot</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ngsplot/bin</environment_variable>
                </action>
                <action type="set_environment">
                    <environment_variable name="NGSPLOT" action="prepend_to">$INSTALL_DIR/ngsplot</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            This installation of ngsplot assumes that R v3.0+ has already been installed on your system, including R packages doMC and caTools, as well as bioconductor packages BSgenome, Rsamtools, and ShortRead. For more information on how to install these additional R packages, see https://code.google.com/p/ngsplot/.
        </readme>
    </package>
</tool_dependency>