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changeset 8:bb51014370e1 draft

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Uploaded
author ngsplot
date Thu, 19 Mar 2015 17:27:40 -0400
parents c3c019ccc5b0
children a011d3385b3f
files ngsplot_galaxytoolshed_v1.0/ngsplot_intro/intro.xml
diffstat 1 files changed, 3 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/ngsplot_galaxytoolshed_v1.0/ngsplot_intro/intro.xml	Thu Mar 19 17:21:56 2015 -0400
+++ b/ngsplot_galaxytoolshed_v1.0/ngsplot_intro/intro.xml	Thu Mar 19 17:27:40 2015 -0400
@@ -18,10 +18,12 @@
 
 **HOW TO USE**
 
-To use ngs.plot here on this GUI-based galaxy implementation, first upload your alignment BAM file(s) using the *Get Data* -> **Upload File** tool on top of the left panel of this page. The names of your uploaded file(s) will then be displayed on the right panel. Next, select the *NGS.PLOT V2.47.1* -> **ngs.plot** tool on the left panel and all other input information required from you will be displayed as a form on the main central panel. Complete the form then click the *Execute* button to launch the program. Three output files (a profile chart, a heatmap, and a zipped data file) will be generated and displayed on the right panel, which you can click on to view. To further replot the figures into a format that you desire, use the *NGS.PLOT V2.47.1* -> **replot** tool with it's input file being the zip file previously generated by 'ngs.plot'.
+To use ngs.plot here on this GUI-based Galaxy implementation, first upload your alignment BAM file(s) using the *Get Data* -> **Upload File** tool on top of the left panel of this page. The names of your uploaded file(s) will then be displayed on the right panel. Next, select the *NGS.PLOT V2.47.1* -> **ngs.plot** tool on the left panel and all other input information required from you will be displayed as a form on the main central panel. Complete the form then click the *Execute* button to launch the program. Three output files (a profile chart, a heatmap, and a zipped data file) will be generated and displayed on the right panel, which you can click on to view. To further replot the figures into a format that you desire, use the *NGS.PLOT V2.47.1* -> **replot** tool with it's input file being the zip file previously generated by 'ngs.plot'.
 
 For a more detailed explanation of how to run ngs.plot on Galaxy, please see the tutorial at https://code.google.com/p/ngsplot/wiki/webngsplot. 
 
+(Note: installation of this Galaxy implementation of ngs.plot directly from the Galaxy Toolshed requires ngs.plot v2.47.1 to be already installed on your system. For instructions on the system installation of ngs.plot, please see https://code.google.com/p/ngsplot/.
+
 -----
 
 **INTRODUCTION**
@@ -48,9 +50,6 @@
 
 -----
 
-**Galaxy Toolshed Installation**
-
-Please note that the Galaxy Toolshed implementation of ngs.plot requires ngs.plot v2.47.1 to be already installed on your system. For instructions on the system installation of ngs.plot, please see https://code.google.com/p/ngsplot/.
 
 </help>
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