annotate tests/artificial-nofilt.csv.out @ 5:31361191d2d2

Uploaded tarball. Version 1.1: Stranded output, slightly different handling of minor allele ties and 0 coverage sites, revised help text, added test datasets.

#SAMPLE	CHR	POS	A	C	G	T	CVRG	ALLELES	MAJOR	MINOR	MINOR.FREQ.PERC.
THYROID	chr1	0	30	0	0	0	30	1	A	.	0.0
THYROID	chr1	10	30	0	2	0	32	2	A	G	0.0625
THYROID	chr1	20	31	0	1	0	32	0	A	G	0.03125
THYROID	chr1	30	21	0	4	0	25	2	A	G	0.16
THYROID	chr1	40	22	0	3	0	25	0	A	G	0.12
THYROID	chr1	50	3	0	0	0	3	1	A	.	0.0
THYROID	chr1	60	2	0	2	0	4	2	A	G	0.5
THYROID	chr1	70	1	0	3	0	4	0	G	A	0.25
THYROID	chr1	80	104	0	3	0	107	0	A	G	0.02804
THYROID	chr1	90	100	2	11	0	113	3	A	G	0.09735
THYROID	chr1	100	100	1	11	0	112	0	A	G	0.09821
THYROID	chr1	120	0	0	0	0	0	0	.	.	0.0
THYROID	chr1	130	0	0	2	0	2	1	G	.	0.0
THYROID	chr1	140	0	0	1	0	1	0	G	.	0.0
THYROID	chr1	150	0	0	4	0	4	1	G	.	0.0
THYROID	chr1	160	0	0	3	0	3	0	G	.	0.0
THYROID	chr1	260	106	0	14	0	120	2	A	G	0.11667
THYROID	chr1	300	2	0	2	76	80	3	T	G	0.025
THYROID	chr1	310	12	0	12	76	100	3	T	G	0.12
THYROID	chr1	320	12	0	12	56	80	3	T	A	0.15
THYROID	chr1	330	7	0	7	66	80	3	T	G	0.0875
THYROID	chr1	340	1	0	1	98	100	0	T	G	0.01
THYROID	chr1	350	11	0	11	78	100	0	T	A	0.11
THYROID	chr1	400	32	0	8	0	40	2	A	G	0.2
THYROID	chr1	410	1	0	2	97	100	0	T	G	0.02
THYROID	chr1	420	104	0	0	0	104	1	A	.	0.0