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annotate tests/artificial-nofilt.csv.out @ 8:411adeff1eec draft

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Handle "." sample columns, update tests to work with BIAS column.
author nick
date Tue, 23 Aug 2016 02:30:56 -0400
parents 31361191d2d2
children 6cc488e11544
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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1 #SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MAF BIAS
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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2 THYROID chr1 0 30 0 0 0 30 1 A . 0.0 .
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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3 THYROID chr1 10 30 0 2 0 32 2 A G 0.0625 0.0
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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4 THYROID chr1 20 31 0 1 0 32 0 A G 0.03125 2.0
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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5 THYROID chr1 30 21 0 4 0 25 2 A G 0.16 0.08013
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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6 THYROID chr1 40 22 0 3 0 25 0 A G 0.12 1.78571
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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7 THYROID chr1 50 3 0 0 0 3 1 A . 0.0 .
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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8 THYROID chr1 60 2 0 2 0 4 2 A G 0.5 0.0
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9 THYROID chr1 70 1 0 3 0 4 0 G A 0.25 2.0
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10 THYROID chr1 80 104 0 3 0 107 0 A G 0.02804 1.01905
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11 THYROID chr1 90 100 2 11 0 113 3 A G 0.09735 0.16381
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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12 THYROID chr1 100 100 1 11 0 112 0 A G 0.09821 0.16381
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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13 THYROID chr1 120 0 0 0 0 0 0 . . 0.0 .
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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14 THYROID chr1 130 0 0 2 0 2 1 G . 0.0 .
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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15 THYROID chr1 140 0 0 1 0 1 0 G . 0.0 .
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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16 THYROID chr1 150 0 0 4 0 4 1 G . 0.0 .
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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17 THYROID chr1 160 0 0 3 0 3 0 G . 0.0 .
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18 THYROID chr1 260 106 0 14 0 120 2 A G 0.11667 2.4
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19 THYROID chr1 300 2 0 2 76 80 3 T G 0.025 0.0
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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20 THYROID chr1 310 12 0 12 76 100 3 T G 0.12 0.0
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21 THYROID chr1 320 12 0 12 56 80 3 T A 0.15 0.64394
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22 THYROID chr1 330 7 0 7 66 80 3 T G 0.0875 1.06247
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23 THYROID chr1 340 1 0 1 98 100 0 T G 0.01 5.21053
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24 THYROID chr1 350 11 0 11 78 100 0 T A 0.11 1.25352
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
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25 THYROID chr1 400 32 0 8 0 40 2 A G 0.2 0.0
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26 THYROID chr1 410 1 0 2 97 100 0 T G 0.02 5.5
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27 THYROID chr1 420 104 0 0 0 104 1 A . 0.0 .