annotate tests/real-nofilt.csv.out @ 6:df3b28364cd2

allele-counts.{py,xml}: Add strand bias, documentation updates.
author nicksto <nmapsy@gmail.com>
date Wed, 09 Dec 2015 11:20:51 -0500
parents 31361191d2d2
children 411adeff1eec
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
1 #SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC.
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
2 THYROID chr1 246704250 29 0 0 0 29 1 A . 0.0
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
3 THYROID chr1 246704257 0 0 0 71 71 1 T . 0.0
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
4 THYROID chr1 246704268 104 0 0 0 104 1 A . 0.0
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
5 THYROID chr1 246704269 0 0 0 105 105 1 T . 0.0
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
6 THYROID chr1 246704363 0 72 3 0 75 0 C G 0.04
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
7 THYROID chr1 246704437 5 130 0 0 135 0 C A 0.03704
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
8 THYROID chr1 246707878 0 0 131 0 131 1 G . 0.0
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
9 THYROID chr1 246714587 30 0 43 0 73 2 G A 0.41096
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
10 THYROID chr1 246729215 1 0 1 88 90 0 T G 0.01111
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
11 THYROID chr1 246729216 1 0 1 90 92 0 T G 0.01087
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
12 THYROID chr1 246729378 16 7 0 0 23 0 A C 0.30435
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
13 THYROID chr1 246729392 29 0 10 0 39 0 A G 0.25641
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
14 THYROID chr7 91502881 0 0 0 26 26 1 T . 0.0
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
15 THYROID chr7 91502897 7 36 0 0 43 0 C A 0.16279