Mercurial > repos > nick > allele_counts
comparison tests/real-mit.csv.out @ 5:31361191d2d2
Uploaded tarball.
Version 1.1: Stranded output, slightly different handling of minor allele ties and 0 coverage sites, revised help text, added test datasets.
| author | nick |
|---|---|
| date | Thu, 12 Sep 2013 11:34:23 -0400 |
| parents | |
| children | 411adeff1eec |
comparison
equal
deleted
inserted
replaced
| 4:898eb3daab43 | 5:31361191d2d2 |
|---|---|
| 1 #SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC. | |
| 2 S1 chrM 2000 8 14903 1 1 14913 1 C A 0.00054 | |
| 3 S3 chrM 2000 10 13175 1 6 13192 1 C A 0.00076 | |
| 4 S1 chrM 3000 27966 42 44 12 28064 0 A G 0.00157 | |
| 5 S2 chrM 3000 20472 16 36 4 20528 1 A G 0.00175 | |
| 6 S3 chrM 3000 30267 40 46 10 30363 0 A G 0.00152 | |
| 7 S4 chrM 3000 15494 17 29 3 15543 0 A G 0.00187 | |
| 8 S1 chrM 4000 12258 3 2 4 12267 1 A T 0.00033 | |
| 9 S1 chrM 7000 4 26 3 13745 13778 0 T C 0.00189 | |
| 10 S2 chrM 7000 0 16 6 11392 11414 1 T C 0.0014 | |
| 11 S3 chrM 7000 4 13 10 13952 13979 1 T C 0.00093 | |
| 12 S3 chrM 8000 4 1 10066 3 10074 1 G A 0.0004 |