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comparison tests/artificial-nofilt.csv.out @ 8:411adeff1eec draft

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Handle "." sample columns, update tests to work with BIAS column.
author nick
date Tue, 23 Aug 2016 02:30:56 -0400
parents 31361191d2d2
children 6cc488e11544
comparison
equal deleted inserted replaced
7:a72277535a2c 8:411adeff1eec
1 #SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC. 1 #SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MAF BIAS
2 THYROID chr1 0 30 0 0 0 30 1 A . 0.0 2 THYROID chr1 0 30 0 0 0 30 1 A . 0.0 .
3 THYROID chr1 10 30 0 2 0 32 2 A G 0.0625 3 THYROID chr1 10 30 0 2 0 32 2 A G 0.0625 0.0
4 THYROID chr1 20 31 0 1 0 32 0 A G 0.03125 4 THYROID chr1 20 31 0 1 0 32 0 A G 0.03125 2.0
5 THYROID chr1 30 21 0 4 0 25 2 A G 0.16 5 THYROID chr1 30 21 0 4 0 25 2 A G 0.16 0.08013
6 THYROID chr1 40 22 0 3 0 25 0 A G 0.12 6 THYROID chr1 40 22 0 3 0 25 0 A G 0.12 1.78571
7 THYROID chr1 50 3 0 0 0 3 1 A . 0.0 7 THYROID chr1 50 3 0 0 0 3 1 A . 0.0 .
8 THYROID chr1 60 2 0 2 0 4 2 A G 0.5 8 THYROID chr1 60 2 0 2 0 4 2 A G 0.5 0.0
9 THYROID chr1 70 1 0 3 0 4 0 G A 0.25 9 THYROID chr1 70 1 0 3 0 4 0 G A 0.25 2.0
10 THYROID chr1 80 104 0 3 0 107 0 A G 0.02804 10 THYROID chr1 80 104 0 3 0 107 0 A G 0.02804 1.01905
11 THYROID chr1 90 100 2 11 0 113 3 A G 0.09735 11 THYROID chr1 90 100 2 11 0 113 3 A G 0.09735 0.16381
12 THYROID chr1 100 100 1 11 0 112 0 A G 0.09821 12 THYROID chr1 100 100 1 11 0 112 0 A G 0.09821 0.16381
13 THYROID chr1 120 0 0 0 0 0 0 . . 0.0 13 THYROID chr1 120 0 0 0 0 0 0 . . 0.0 .
14 THYROID chr1 130 0 0 2 0 2 1 G . 0.0 14 THYROID chr1 130 0 0 2 0 2 1 G . 0.0 .
15 THYROID chr1 140 0 0 1 0 1 0 G . 0.0 15 THYROID chr1 140 0 0 1 0 1 0 G . 0.0 .
16 THYROID chr1 150 0 0 4 0 4 1 G . 0.0 16 THYROID chr1 150 0 0 4 0 4 1 G . 0.0 .
17 THYROID chr1 160 0 0 3 0 3 0 G . 0.0 17 THYROID chr1 160 0 0 3 0 3 0 G . 0.0 .
18 THYROID chr1 260 106 0 14 0 120 2 A G 0.11667 18 THYROID chr1 260 106 0 14 0 120 2 A G 0.11667 2.4
19 THYROID chr1 300 2 0 2 76 80 3 T G 0.025 19 THYROID chr1 300 2 0 2 76 80 3 T G 0.025 0.0
20 THYROID chr1 310 12 0 12 76 100 3 T G 0.12 20 THYROID chr1 310 12 0 12 76 100 3 T G 0.12 0.0
21 THYROID chr1 320 12 0 12 56 80 3 T A 0.15 21 THYROID chr1 320 12 0 12 56 80 3 T A 0.15 0.64394
22 THYROID chr1 330 7 0 7 66 80 3 T G 0.0875 22 THYROID chr1 330 7 0 7 66 80 3 T G 0.0875 1.06247
23 THYROID chr1 340 1 0 1 98 100 0 T G 0.01 23 THYROID chr1 340 1 0 1 98 100 0 T G 0.01 5.21053
24 THYROID chr1 350 11 0 11 78 100 0 T A 0.11 24 THYROID chr1 350 11 0 11 78 100 0 T A 0.11 1.25352
25 THYROID chr1 400 32 0 8 0 40 2 A G 0.2 25 THYROID chr1 400 32 0 8 0 40 2 A G 0.2 0.0
26 THYROID chr1 410 1 0 2 97 100 0 T G 0.02 26 THYROID chr1 410 1 0 2 97 100 0 T G 0.02 5.5
27 THYROID chr1 420 104 0 0 0 104 1 A . 0.0 27 THYROID chr1 420 104 0 0 0 104 1 A . 0.0 .