Mercurial > repos > nick > allele_counts

comparison tests/artificial.csv.out @ 8:411adeff1eec draft

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Handle "." sample columns, update tests to work with BIAS column.
author nick
date Tue, 23 Aug 2016 02:30:56 -0400
parents 31361191d2d2
children 6cc488e11544
comparison
equal deleted inserted replaced
7:a72277535a2c 8:411adeff1eec
1 THYROID chr1 0 30 0 0 0 30 1 A . 0.0 1 THYROID chr1 0 30 0 0 0 30 1 A . 0.0 .
2 THYROID chr1 10 30 0 2 0 32 1 A G 0.0625 2 THYROID chr1 10 30 0 2 0 32 1 A G 0.0625 0.0
3 THYROID chr1 20 31 0 1 0 32 1 A G 0.03125 3 THYROID chr1 20 31 0 1 0 32 1 A G 0.03125 2.0
4 THYROID chr1 30 21 0 4 0 25 2 A G 0.16 4 THYROID chr1 30 21 0 4 0 25 2 A G 0.16 0.08013
5 THYROID chr1 40 22 0 3 0 25 0 A G 0.12 5 THYROID chr1 40 22 0 3 0 25 0 A G 0.12 1.78571
6 THYROID chr1 50 30 0 0 0 30 1 A . 0.0 6 THYROID chr1 50 30 0 0 0 30 1 A . 0.0 .
7 THYROID chr1 60 31 0 0 0 31 1 A . 0.0 7 THYROID chr1 60 31 0 0 0 31 1 A . 0.0 .
8 THYROID chr1 70 21 0 0 0 21 1 A . 0.0 8 THYROID chr1 70 21 0 0 0 21 1 A . 0.0 .
9 THYROID chr1 80 22 0 0 0 22 1 A . 0.0 9 THYROID chr1 80 22 0 0 0 22 1 A . 0.0 .
10 THYROID chr1 82 30 0 2 0 32 1 A G 0.0625 10 THYROID chr1 82 30 0 2 0 32 1 A G 0.0625 0.0
11 THYROID chr1 84 31 0 1 0 32 1 A G 0.03125 11 THYROID chr1 84 31 0 1 0 32 1 A G 0.03125 2.0
12 THYROID chr1 86 21 0 4 0 25 2 A G 0.16 12 THYROID chr1 86 21 0 4 0 25 2 A G 0.16 0.08013
13 THYROID chr1 88 22 0 3 0 25 0 A G 0.12 13 THYROID chr1 88 22 0 3 0 25 0 A G 0.12 1.78571
14 THYROID chr1 90 30 0 0 0 30 1 A . 0.0 14 THYROID chr1 90 30 0 0 0 30 1 A . 0.0 .
15 THYROID chr1 100 31 0 0 0 31 1 A . 0.0 15 THYROID chr1 100 31 0 0 0 31 1 A . 0.0 .
16 THYROID chr1 110 21 0 0 0 21 1 A . 0.0 16 THYROID chr1 110 21 0 0 0 21 1 A . 0.0 .
17 THYROID chr1 120 22 0 0 0 22 1 A . 0.0 17 THYROID chr1 120 22 0 0 0 22 1 A . 0.0 .
18 THYROID chr1 210 20 0 0 0 20 1 A . 0.0 18 THYROID chr1 210 20 0 0 0 20 1 A . 0.0 .
19 THYROID chr1 220 22 0 0 0 22 1 A . 0.0 19 THYROID chr1 220 22 0 0 0 22 1 A . 0.0 .
20 THYROID chr1 230 182 0 18 0 200 1 A G 0.09 20 THYROID chr1 230 182 0 18 0 200 1 A G 0.09 0.0
21 THYROID chr1 240 180 0 20 0 200 2 A G 0.1 21 THYROID chr1 240 180 0 20 0 200 2 A G 0.1 0.0
22 THYROID chr1 250 178 0 22 0 200 2 A G 0.11 22 THYROID chr1 250 178 0 22 0 200 2 A G 0.11 0.0
23 THYROID chr1 260 106 0 14 0 120 0 A G 0.11667 23 THYROID chr1 260 106 0 14 0 120 0 A G 0.11667 2.4
24 THYROID chr1 300 2 0 2 76 80 1 T G 0.025 24 THYROID chr1 300 2 0 2 76 80 1 T G 0.025 0.0
25 THYROID chr1 310 12 0 12 76 100 3 T G 0.12 25 THYROID chr1 310 12 0 12 76 100 3 T G 0.12 0.0
26 THYROID chr1 320 12 0 12 56 80 3 T A 0.15 26 THYROID chr1 320 12 0 12 56 80 3 T A 0.15 0.64394
27 THYROID chr1 330 7 0 7 66 80 0 T G 0.0875 27 THYROID chr1 330 7 0 7 66 80 0 T G 0.0875 1.06247
28 THYROID chr1 340 1 0 1 98 100 1 T G 0.01 28 THYROID chr1 340 1 0 1 98 100 1 T G 0.01 5.21053
29 THYROID chr1 350 11 0 11 78 100 0 T A 0.11 29 THYROID chr1 350 11 0 11 78 100 0 T A 0.11 1.25352
30 THYROID chr1 400 32 0 8 0 40 2 A G 0.2 30 THYROID chr1 400 32 0 8 0 40 2 A G 0.2 0.0
31 THYROID chr1 410 1 0 2 97 100 0 T G 0.02 31 THYROID chr1 410 1 0 2 97 100 0 T G 0.02 5.5
32 THYROID chr1 420 104 0 0 0 104 1 A . 0.0 32 THYROID chr1 420 104 0 0 0 104 1 A . 0.0 .
33 THYROID chr1 430 30 0 0 0 30 1 A . 0.0 33 THYROID chr1 430 30 0 0 0 30 1 A . 0.0 .
34 THYROID chr1 440 30 0 0 0 30 1 A . 0.0 34 THYROID chr1 440 30 0 0 0 30 1 A . 0.0 .
35 THYROID 27 1234567890 29 0 0 0 29 1 A . 0.0 35 THYROID 27 1234567890 29 0 0 0 29 1 A . 0.0 .