Mercurial > repos > nick > allele_counts

comparison tests/real-mit.csv.out @ 8:411adeff1eec draft

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Handle "." sample columns, update tests to work with BIAS column.
author nick
date Tue, 23 Aug 2016 02:30:56 -0400
parents 31361191d2d2
children
comparison
equal deleted inserted replaced
7:a72277535a2c 8:411adeff1eec
1 #SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC. 1 #SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MAF BIAS
2 S1 chrM 2000 8 14903 1 1 14913 1 C A 0.00054 2 S1 chrM 2000 8 14903 1 1 14913 1 C A 0.00054 2.03879
3 S3 chrM 2000 10 13175 1 6 13192 1 C A 0.00076 3 S3 chrM 2000 10 13175 1 6 13192 1 C A 0.00076 2.51047
4 S1 chrM 3000 27966 42 44 12 28064 0 A G 0.00157 4 S1 chrM 3000 27966 42 44 12 28064 0 A G 0.00157 0.51868
5 S2 chrM 3000 20472 16 36 4 20528 1 A G 0.00175 5 S2 chrM 3000 20472 16 36 4 20528 1 A G 0.00175 0.22864
6 S3 chrM 3000 30267 40 46 10 30363 0 A G 0.00152 6 S3 chrM 3000 30267 40 46 10 30363 0 A G 0.00152 0.01416
7 S4 chrM 3000 15494 17 29 3 15543 0 A G 0.00187 7 S4 chrM 3000 15494 17 29 3 15543 0 A G 0.00187 0.33202
8 S1 chrM 4000 12258 3 2 4 12267 1 A T 0.00033 8 S1 chrM 4000 12258 3 2 4 12267 1 A T 0.00033 0.99804
9 S1 chrM 7000 4 26 3 13745 13778 0 T C 0.00189 9 S1 chrM 7000 4 26 3 13745 13778 0 T C 0.00189 0.81221
10 S2 chrM 7000 0 16 6 11392 11414 1 T C 0.0014 10 S2 chrM 7000 0 16 6 11392 11414 1 T C 0.0014 0.04254
11 S3 chrM 7000 4 13 10 13952 13979 1 T C 0.00093 11 S3 chrM 7000 4 13 10 13952 13979 1 T C 0.00093 0.92561
12 S3 chrM 8000 4 1 10066 3 10074 1 G A 0.0004 12 S3 chrM 8000 4 1 10066 3 10074 1 G A 0.0004 1.00358