Mercurial > repos > nick > allele_counts
comparison allele-counts.xml @ 10:7f19e8c03358 draft
"planemo upload for repository https://github.com/galaxyproject/dunovo commit 19875a8a45eb5e40a47fe177deafe690fb4f04fb"
| author | nick |
|---|---|
| date | Tue, 31 Mar 2020 20:24:27 -0400 |
| parents | 6cc488e11544 |
| children | cf2af5c3118c |
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| 9:6cc488e11544 | 10:7f19e8c03358 |
|---|---|
| 2 <description> process variant counts</description> | 2 <description> process variant counts</description> |
| 3 <stdio> | 3 <stdio> |
| 4 <exit_code range="1:" level="fatal" /> | 4 <exit_code range="1:" level="fatal" /> |
| 5 <exit_code range=":-1" level="fatal" /> | 5 <exit_code range=":-1" level="fatal" /> |
| 6 </stdio> | 6 </stdio> |
| 7 <command>allele-counts.py -i $input -o $output -f $freq -c $covg $header $stranded $nofilt | 7 <command>allele-counts.py -i '$input' -o '$output' -f $freq -c $covg $header $stranded $nofilt |
| 8 #if $seed: | 8 #if $seed: |
| 9 -r $seed | 9 -r '$seed' |
| 10 #end if | 10 #end if |
| 11 </command> | 11 </command> |
| 12 <inputs> | 12 <inputs> |
| 13 <param name="input" type="data" format="vcf" label="Input variants from Naive Variants Detector"/> | 13 <param name="input" type="data" format="vcf" label="Input variants from Naive Variants Detector"/> |
| 14 <param name="freq" type="float" value="1.0" min="0" max="100" label="Minor allele frequency threshold" help="in percent"/> | 14 <param name="freq" type="float" value="1.0" min="0" max="100" label="Minor allele frequency threshold" help="in percent"/> |