Mercurial > repos > nick > allele_counts
comparison allele-counts.xml @ 11:cf2af5c3118c draft default tip
"planemo upload for repository https://github.com/galaxyproject/dunovo commit ac9577f0047ad984b307fe2c4b40e2eb45a0e6e2"
| author | nick |
|---|---|
| date | Fri, 03 Apr 2020 16:05:04 -0400 |
| parents | 7f19e8c03358 |
| children |
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| 10:7f19e8c03358 | 11:cf2af5c3118c |
|---|---|
| 1 <tool id="allele_counts_1" version="1.3" name="Variant Annotator"> | 1 <tool id="allele_counts_1" version="1.3.2" name="Variant Annotator"> |
| 2 <description> process variant counts</description> | 2 <description> process variant counts</description> |
| 3 <stdio> | 3 <stdio> |
| 4 <exit_code range="1:" level="fatal" /> | 4 <exit_code range="1:" level="fatal" /> |
| 5 <exit_code range=":-1" level="fatal" /> | 5 <exit_code range=":-1" level="fatal" /> |
| 6 </stdio> | 6 </stdio> |
| 7 <command>allele-counts.py -i '$input' -o '$output' -f $freq -c $covg $header $stranded $nofilt | 7 <command>python3 '$__tool_directory__/allele-counts.py' -i '$input' -o '$output' -f $freq -c $covg $header $stranded $nofilt |
| 8 #if $seed: | 8 #if $seed: |
| 9 -r '$seed' | 9 -r '$seed' |
| 10 #end if | 10 #end if |
| 11 </command> | 11 </command> |
| 12 <inputs> | 12 <inputs> |