Mercurial > repos > nick > allele_counts

diff tests/real.csv.out @ 5:31361191d2d2

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Uploaded tarball. Version 1.1: Stranded output, slightly different handling of minor allele ties and 0 coverage sites, revised help text, added test datasets.
author nick
date Thu, 12 Sep 2013 11:34:23 -0400
parents
children 411adeff1eec
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tests/real.csv.out	Thu Sep 12 11:34:23 2013 -0400
@@ -0,0 +1,11 @@
+THYROID	chr1	246704250	29	0	0	0	29	1	A	.	0.0
+THYROID	chr1	246704257	0	0	0	71	71	1	T	.	0.0
+THYROID	chr1	246704268	104	0	0	0	104	1	A	.	0.0
+THYROID	chr1	246704269	0	0	0	105	105	1	T	.	0.0
+THYROID	chr1	246704363	0	72	3	0	75	0	C	G	0.04
+THYROID	chr1	246704437	5	130	0	0	135	0	C	A	0.03704
+THYROID	chr1	246707878	0	0	131	0	131	1	G	.	0.0
+THYROID	chr1	246714587	30	0	43	0	73	2	G	A	0.41096
+THYROID	chr1	246729216	1	0	1	90	92	0	T	G	0.01087
+THYROID	chr7	91502881	0	0	0	26	26	1	T	.	0.0
+THYROID	chr7	91502897	7	36	0	0	43	0	C	A	0.16279