Mercurial > repos > nick > allele_counts
diff tests/artificial-nofilt.csv.out @ 8:411adeff1eec draft
Handle "." sample columns, update tests to work with BIAS column.
| author | nick |
|---|---|
| date | Tue, 23 Aug 2016 02:30:56 -0400 |
| parents | 31361191d2d2 |
| children | 6cc488e11544 |
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--- a/tests/artificial-nofilt.csv.out Wed Dec 09 11:37:02 2015 -0500 +++ b/tests/artificial-nofilt.csv.out Tue Aug 23 02:30:56 2016 -0400 @@ -1,27 +1,27 @@ -#SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC. -THYROID chr1 0 30 0 0 0 30 1 A . 0.0 -THYROID chr1 10 30 0 2 0 32 2 A G 0.0625 -THYROID chr1 20 31 0 1 0 32 0 A G 0.03125 -THYROID chr1 30 21 0 4 0 25 2 A G 0.16 -THYROID chr1 40 22 0 3 0 25 0 A G 0.12 -THYROID chr1 50 3 0 0 0 3 1 A . 0.0 -THYROID chr1 60 2 0 2 0 4 2 A G 0.5 -THYROID chr1 70 1 0 3 0 4 0 G A 0.25 -THYROID chr1 80 104 0 3 0 107 0 A G 0.02804 -THYROID chr1 90 100 2 11 0 113 3 A G 0.09735 -THYROID chr1 100 100 1 11 0 112 0 A G 0.09821 -THYROID chr1 120 0 0 0 0 0 0 . . 0.0 -THYROID chr1 130 0 0 2 0 2 1 G . 0.0 -THYROID chr1 140 0 0 1 0 1 0 G . 0.0 -THYROID chr1 150 0 0 4 0 4 1 G . 0.0 -THYROID chr1 160 0 0 3 0 3 0 G . 0.0 -THYROID chr1 260 106 0 14 0 120 2 A G 0.11667 -THYROID chr1 300 2 0 2 76 80 3 T G 0.025 -THYROID chr1 310 12 0 12 76 100 3 T G 0.12 -THYROID chr1 320 12 0 12 56 80 3 T A 0.15 -THYROID chr1 330 7 0 7 66 80 3 T G 0.0875 -THYROID chr1 340 1 0 1 98 100 0 T G 0.01 -THYROID chr1 350 11 0 11 78 100 0 T A 0.11 -THYROID chr1 400 32 0 8 0 40 2 A G 0.2 -THYROID chr1 410 1 0 2 97 100 0 T G 0.02 -THYROID chr1 420 104 0 0 0 104 1 A . 0.0 +#SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MAF BIAS +THYROID chr1 0 30 0 0 0 30 1 A . 0.0 . +THYROID chr1 10 30 0 2 0 32 2 A G 0.0625 0.0 +THYROID chr1 20 31 0 1 0 32 0 A G 0.03125 2.0 +THYROID chr1 30 21 0 4 0 25 2 A G 0.16 0.08013 +THYROID chr1 40 22 0 3 0 25 0 A G 0.12 1.78571 +THYROID chr1 50 3 0 0 0 3 1 A . 0.0 . +THYROID chr1 60 2 0 2 0 4 2 A G 0.5 0.0 +THYROID chr1 70 1 0 3 0 4 0 G A 0.25 2.0 +THYROID chr1 80 104 0 3 0 107 0 A G 0.02804 1.01905 +THYROID chr1 90 100 2 11 0 113 3 A G 0.09735 0.16381 +THYROID chr1 100 100 1 11 0 112 0 A G 0.09821 0.16381 +THYROID chr1 120 0 0 0 0 0 0 . . 0.0 . +THYROID chr1 130 0 0 2 0 2 1 G . 0.0 . +THYROID chr1 140 0 0 1 0 1 0 G . 0.0 . +THYROID chr1 150 0 0 4 0 4 1 G . 0.0 . +THYROID chr1 160 0 0 3 0 3 0 G . 0.0 . +THYROID chr1 260 106 0 14 0 120 2 A G 0.11667 2.4 +THYROID chr1 300 2 0 2 76 80 3 T G 0.025 0.0 +THYROID chr1 310 12 0 12 76 100 3 T G 0.12 0.0 +THYROID chr1 320 12 0 12 56 80 3 T A 0.15 0.64394 +THYROID chr1 330 7 0 7 66 80 3 T G 0.0875 1.06247 +THYROID chr1 340 1 0 1 98 100 0 T G 0.01 5.21053 +THYROID chr1 350 11 0 11 78 100 0 T A 0.11 1.25352 +THYROID chr1 400 32 0 8 0 40 2 A G 0.2 0.0 +THYROID chr1 410 1 0 2 97 100 0 T G 0.02 5.5 +THYROID chr1 420 104 0 0 0 104 1 A . 0.0 .