Mercurial > repos > nick > allele_counts

view tests/real-mit.csv.out @ 5:31361191d2d2

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded tarball. Version 1.1: Stranded output, slightly different handling of minor allele ties and 0 coverage sites, revised help text, added test datasets.
author nick
date Thu, 12 Sep 2013 11:34:23 -0400
parents
children 411adeff1eec
line wrap: on
line source

#SAMPLE	CHR	POS	A	C	G	T	CVRG	ALLELES	MAJOR	MINOR	MINOR.FREQ.PERC.
S1	chrM	2000	8	14903	1	1	14913	1	C	A	0.00054
S3	chrM	2000	10	13175	1	6	13192	1	C	A	0.00076
S1	chrM	3000	27966	42	44	12	28064	0	A	G	0.00157
S2	chrM	3000	20472	16	36	4	20528	1	A	G	0.00175
S3	chrM	3000	30267	40	46	10	30363	0	A	G	0.00152
S4	chrM	3000	15494	17	29	3	15543	0	A	G	0.00187
S1	chrM	4000	12258	3	2	4	12267	1	A	T	0.00033
S1	chrM	7000	4	26	3	13745	13778	0	T	C	0.00189
S2	chrM	7000	0	16	6	11392	11414	1	T	C	0.0014
S3	chrM	7000	4	13	10	13952	13979	1	T	C	0.00093
S3	chrM	8000	4	1	10066	3	10074	1	G	A	0.0004