view tests/artificial.csv.out @ 6:df3b28364cd2

allele-counts.{py,xml}: Add strand bias, documentation updates.
author nicksto <nmapsy@gmail.com>
date Wed, 09 Dec 2015 11:20:51 -0500
parents 31361191d2d2
children 411adeff1eec
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THYROID	chr1	0	30	0	0	0	30	1	A	.	0.0
THYROID	chr1	10	30	0	2	0	32	1	A	G	0.0625
THYROID	chr1	20	31	0	1	0	32	1	A	G	0.03125
THYROID	chr1	30	21	0	4	0	25	2	A	G	0.16
THYROID	chr1	40	22	0	3	0	25	0	A	G	0.12
THYROID	chr1	50	30	0	0	0	30	1	A	.	0.0
THYROID	chr1	60	31	0	0	0	31	1	A	.	0.0
THYROID	chr1	70	21	0	0	0	21	1	A	.	0.0
THYROID	chr1	80	22	0	0	0	22	1	A	.	0.0
THYROID	chr1	82	30	0	2	0	32	1	A	G	0.0625
THYROID	chr1	84	31	0	1	0	32	1	A	G	0.03125
THYROID	chr1	86	21	0	4	0	25	2	A	G	0.16
THYROID	chr1	88	22	0	3	0	25	0	A	G	0.12
THYROID	chr1	90	30	0	0	0	30	1	A	.	0.0
THYROID	chr1	100	31	0	0	0	31	1	A	.	0.0
THYROID	chr1	110	21	0	0	0	21	1	A	.	0.0
THYROID	chr1	120	22	0	0	0	22	1	A	.	0.0
THYROID	chr1	210	20	0	0	0	20	1	A	.	0.0
THYROID	chr1	220	22	0	0	0	22	1	A	.	0.0
THYROID	chr1	230	182	0	18	0	200	1	A	G	0.09
THYROID	chr1	240	180	0	20	0	200	2	A	G	0.1
THYROID	chr1	250	178	0	22	0	200	2	A	G	0.11
THYROID	chr1	260	106	0	14	0	120	0	A	G	0.11667
THYROID	chr1	300	2	0	2	76	80	1	T	G	0.025
THYROID	chr1	310	12	0	12	76	100	3	T	G	0.12
THYROID	chr1	320	12	0	12	56	80	3	T	A	0.15
THYROID	chr1	330	7	0	7	66	80	0	T	G	0.0875
THYROID	chr1	340	1	0	1	98	100	1	T	G	0.01
THYROID	chr1	350	11	0	11	78	100	0	T	A	0.11
THYROID	chr1	400	32	0	8	0	40	2	A	G	0.2
THYROID	chr1	410	1	0	2	97	100	0	T	G	0.02
THYROID	chr1	420	104	0	0	0	104	1	A	.	0.0
THYROID	chr1	430	30	0	0	0	30	1	A	.	0.0
THYROID	chr1	440	30	0	0	0	30	1	A	.	0.0
THYROID	27	1234567890	29	0	0	0	29	1	A	.	0.0