Mercurial > repos > nick > dna_visualizer
annotate visualize.xml @ 8:534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
author | Nick Stoler <nstoler@psu.edu> |
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date | Sun, 02 Mar 2014 23:47:41 -0500 |
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children | abed07ebeac7 |
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534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
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changeset
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1 <tool id="dnagram" name="DNA graphic" version="0.1"> |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
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2 <description>Create a graphic from a DNA sequence</description> |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
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3 <command interpreter="python">visualize.py $input $output $size |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
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4 </command> |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
diff
changeset
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5 <inputs> |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
diff
changeset
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6 <param name="input" type="data" format="fasta,text" label="Input sequence" /> |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
diff
changeset
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7 <param name="size" type="integer" value="512" min="0" max="16384" label="Output image width (pixels)" help="Height will be the same. A power of 2 is recommended." /> |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
diff
changeset
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8 </inputs> |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
diff
changeset
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9 <outputs> |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
diff
changeset
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10 <data name="output" format="png"/> |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
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changeset
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11 </outputs> |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
diff
changeset
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12 |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
diff
changeset
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13 <help> |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
diff
changeset
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14 |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
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15 .. class:: infomark |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
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changeset
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16 |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
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17 **What it does** |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
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18 |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
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19 This tool creates a graphic representing a DNA sequence. |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
diff
changeset
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20 The graphic is derived from the sequence, but is not a literal representation. It is intended to be an aesthetic visual based on the sequence. Even a small change in the input sequence will result in a drastically different image. See [here](http://nstoler.com/misc/yourgenome.html) for a full description and rationale. |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
diff
changeset
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21 |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
diff
changeset
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22 </help> |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
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changeset
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23 |
534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
Nick Stoler <nstoler@psu.edu>
parents:
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24 </tool> |