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comparison literal.xml @ 6:0c552e103c93

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literal.xml: Small UI, documentation changes
author Nick Stoler <nstoler@psu.edu>
date Sun, 02 Mar 2014 22:17:29 -0500
parents 58160195728e
children 2d99feb4a8e3
comparison
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5:58160195728e 6:0c552e103c93
17 <when value=""> 17 <when value="">
18 <!-- do nothing --> 18 <!-- do nothing -->
19 </when> 19 </when>
20 <when value="true"> 20 <when value="true">
21 <!-- 'G':'255,255,255', 'C':'0,0,255', 'A':'0,255,0', 'T':'255,0,0' --> 21 <!-- 'G':'255,255,255', 'C':'0,0,255', 'A':'0,255,0', 'T':'255,0,0' -->
22 <param name="background" type="text" value="255,255,255" label="Background RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)">
23 <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator>
24 </param>
22 <param name="G" type="text" value="255,255,255" label="G RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)"> 25 <param name="G" type="text" value="255,255,255" label="G RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)">
23 <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator> 26 <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator>
24 </param> 27 </param>
25 <param name="C" type="text" value="0,0,255" label="C RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)"> 28 <param name="C" type="text" value="0,0,255" label="C RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)">
26 <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator> 29 <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator>
27 </param> 30 </param>
28 <param name="A" type="text" value="0,255,0" label="A RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)"> 31 <param name="A" type="text" value="0,255,0" label="A RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)">
29 <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator> 32 <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator>
30 </param> 33 </param>
31 <param name="T" type="text" value="255,0,0" label="T RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)"> 34 <param name="T" type="text" value="255,0,0" label="T RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)">
32 <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator>
33 </param>
34 <param name="background" type="text" value="255,255,255" label="background RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)">
35 <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator> 35 <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator>
36 </param> 36 </param>
37 </when> 37 </when>
38 </conditional> 38 </conditional>
39 </inputs> 39 </inputs>
53 53
54 .. class:: infomark 54 .. class:: infomark
55 55
56 **Input Format** 56 **Input Format**
57 57
58 The input sequence can be in FASTA format or a plain text file containing only the sequence. Any non-ATGC characters (case-insensitive) will be skipped. 58 The input sequence can be in FASTA format or a plain text file containing only the sequence. Any non-ATGC characters (case-insensitive) will be skipped. In a FASTA file with multiple sequences, all sequences will be used.
59 59
60 </help> 60 </help>
61 61
62 </tool> 62 </tool>