Mercurial > repos > nick > dna_visualizer
comparison literal.xml @ 3:3c5c4e3cccab
literal.xml: troubleshooting input param names
author | Nick Stoler <nstoler@psu.edu> |
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date | Sun, 02 Mar 2014 14:59:07 -0500 |
parents | 1695b2153760 |
children | 16772d7246e0 |
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2:1695b2153760 | 3:3c5c4e3cccab |
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1 <tool id="visualdna" name="DNA visualizer" version="0.1"> | 1 <tool id="visualdna" name="DNA visualizer" version="0.1"> |
2 <description>Visualize DNA with colored pixels.</description> | 2 <description>Visualize DNA with colored pixels.</description> |
3 <command interpreter="python">literal.py $input -o $output -s ${width}x${height} | 3 <command interpreter="python">literal.py $input -o $output -s ${width}x${height} |
4 #if $colors.custom: | 4 #if $colors.custom: |
5 -A $AR,$AG,$AB -T $TR,$TG,$TB -G $GR,$GG,$GB -C $CR,$CG,$CB | 5 -A $colors.AR,$colors.AG,$colors.AB -T $colors.TR,$colors.TG,$colors.TB -G $colors.GR,$colors.GG,$colors.GB -C $colors.CR,$colors.CG,$colors.CB |
6 #end if | 6 #end if |
7 </command> | 7 </command> |
8 <inputs> | 8 <inputs> |
9 <param name="input" type="data" format="fasta,text" label="Input sequence" /> | 9 <param name="input" type="data" format="fasta,text" label="Input sequence" /> |
10 <param name="width" type="integer" value="512" label="Output image width" help="in pixels" /> | 10 <param name="width" type="integer" value="512" label="Output image width" help="in pixels" /> |