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comparison literal.xml @ 3:3c5c4e3cccab

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literal.xml: troubleshooting input param names
author Nick Stoler <nstoler@psu.edu>
date Sun, 02 Mar 2014 14:59:07 -0500
parents 1695b2153760
children 16772d7246e0
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2:1695b2153760 3:3c5c4e3cccab
1 <tool id="visualdna" name="DNA visualizer" version="0.1"> 1 <tool id="visualdna" name="DNA visualizer" version="0.1">
2 <description>Visualize DNA with colored pixels.</description> 2 <description>Visualize DNA with colored pixels.</description>
3 <command interpreter="python">literal.py $input -o $output -s ${width}x${height} 3 <command interpreter="python">literal.py $input -o $output -s ${width}x${height}
4 #if $colors.custom: 4 #if $colors.custom:
5 -A $AR,$AG,$AB -T $TR,$TG,$TB -G $GR,$GG,$GB -C $CR,$CG,$CB 5 -A $colors.AR,$colors.AG,$colors.AB -T $colors.TR,$colors.TG,$colors.TB -G $colors.GR,$colors.GG,$colors.GB -C $colors.CR,$colors.CG,$colors.CB
6 #end if 6 #end if
7 </command> 7 </command>
8 <inputs> 8 <inputs>
9 <param name="input" type="data" format="fasta,text" label="Input sequence" /> 9 <param name="input" type="data" format="fasta,text" label="Input sequence" />
10 <param name="width" type="integer" value="512" label="Output image width" help="in pixels" /> 10 <param name="width" type="integer" value="512" label="Output image width" help="in pixels" />