Mercurial > repos > nick > dna_visualizer
comparison visualize.xml @ 8:534516105ca9
visualize.py: The second tool, for a more aesthetic, abstract visualization.
author | Nick Stoler <nstoler@psu.edu> |
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date | Sun, 02 Mar 2014 23:47:41 -0500 |
parents | |
children | abed07ebeac7 |
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1 <tool id="dnagram" name="DNA graphic" version="0.1"> | |
2 <description>Create a graphic from a DNA sequence</description> | |
3 <command interpreter="python">visualize.py $input $output $size | |
4 </command> | |
5 <inputs> | |
6 <param name="input" type="data" format="fasta,text" label="Input sequence" /> | |
7 <param name="size" type="integer" value="512" min="0" max="16384" label="Output image width (pixels)" help="Height will be the same. A power of 2 is recommended." /> | |
8 </inputs> | |
9 <outputs> | |
10 <data name="output" format="png"/> | |
11 </outputs> | |
12 | |
13 <help> | |
14 | |
15 .. class:: infomark | |
16 | |
17 **What it does** | |
18 | |
19 This tool creates a graphic representing a DNA sequence. | |
20 The graphic is derived from the sequence, but is not a literal representation. It is intended to be an aesthetic visual based on the sequence. Even a small change in the input sequence will result in a drastically different image. See [here](http://nstoler.com/misc/yourgenome.html) for a full description and rationale. | |
21 | |
22 </help> | |
23 | |
24 </tool> |