Mercurial > repos > nick > dna_visualizer
view literal.xml @ 0:5257ce9d9184
Initial literal.py tool
author | Nick Stoler <nstoler@psu.edu> |
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date | Sun, 02 Mar 2014 13:51:03 -0500 |
parents | |
children | 717a4009675c |
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<tool id="visualdna" name="DNA visualizer" version="0.1"> <description>Visualize DNA with colored pixels.</description> <command interpreter="python">literal.py $input -o $output -s ${width}x${height} </command> <inputs> <param name="input" type="data" format="fasta" label="Input sequence" /> <param name="width" type="integer" value="512" min="512" label="Output image width" help="in pixels" /> <param name="height" type="integer" value="512" min="512" label="Output image height" help="in pixels" /> </inputs> <outputs> <data name="output" format="png"/> </outputs> <stdio> <exit_code range="1:" err_level="fatal"/> <exit_code range=":-1" err_level="fatal"/> </stdio> <help> .. class:: infomark **What it does** This tool convert DNA sequence into a PNG image by representing each base with one colored pixel. ----- .. class:: infomark **Input Format** The input sequence can be in FASTA format or a plain text file containing only the sequence. Any non-ATGC characters (case-insensitive) will be skipped. </help> </tool>