Mercurial > repos > nick > dunovo
comparison correct_barcodes.xml @ 6:23f5d9316694 draft
Bugfix in kalign for very diverse read lengths.
author | nick |
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date | Thu, 02 Nov 2017 16:24:48 -0400 |
parents | 000969829a5d |
children | e7b88ffb8294 |
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5:000969829a5d | 6:23f5d9316694 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="2.0.6.1"> | 2 <tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="2.0.8"> |
3 <description>of duplex sequencing reads</description> | 3 <description>of duplex sequencing reads</description> |
4 <requirements> | 4 <requirements> |
5 <requirement type="package" version="2.2.5">bowtie2</requirement> | 5 <requirement type="package" version="2.2.5">bowtie2</requirement> |
6 <requirement type="package" version="0.1.18">samtools</requirement> | 6 <requirement type="package" version="0.1.18">samtools</requirement> |
7 <requirement type="package" version="1.11">networkx</requirement> | 7 <requirement type="package" version="1.10">networkx</requirement> |
8 <requirement type="package" version="2.0.6">dunovo</requirement> | 8 <requirement type="package" version="2.0.8">dunovo</requirement> |
9 <!-- TODO: require Python 2.7 --> | 9 <!-- TODO: require Python 2.7 --> |
10 </requirements> | 10 </requirements> |
11 <version_command>correct.py --version</version_command> | 11 <version_command>correct.py --version</version_command> |
12 <command detect_errors="exit_code"><![CDATA[ | 12 <command detect_errors="exit_code"><![CDATA[ |
13 baralign.sh '$input' refdir correct.sam | 13 baralign.sh '$input' refdir correct.sam |