Mercurial > repos > nick > dunovo
comparison align_families.xml @ 7:e7b88ffb8294 draft
planemo upload for repository https://github.com/galaxyproject/dunovo commit b'9101e88acb2d3dc022c47e0663fec1f6b9fa58a5\n'-dirty
author | nick |
---|---|
date | Fri, 10 Nov 2017 09:33:29 -0500 |
parents | 23f5d9316694 |
children | 658eefb99fd7 |
comparison
equal
deleted
inserted
replaced
6:23f5d9316694 | 7:e7b88ffb8294 |
---|---|
1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <tool id="align_families" name="Du Novo: Align families" version="2.0.8"> | 2 <tool id="align_families" name="Du Novo: Align families" version="2.0.9"> |
3 <description>of duplex sequencing reads</description> | 3 <description>of duplex sequencing reads</description> |
4 <requirements> | 4 <requirements> |
5 <requirement type="package" version="7.221">mafft</requirement> | 5 <requirement type="package" version="7.221">mafft</requirement> |
6 <requirement type="package" version="2.0.8">dunovo</requirement> | 6 <requirement type="package" version="2.0.9">dunovo</requirement> |
7 <!-- TODO: require Python 2.7 --> | 7 <!-- TODO: require Python 2.7 --> |
8 </requirements> | 8 </requirements> |
9 <version_command>align_families.py --version</version_command> | 9 <version_command>align-families.py --version</version_command> |
10 <command detect_errors="exit_code">align_families.py --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' > '$output' | 10 <command detect_errors="exit_code">align-families.py --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' > '$output' |
11 </command> | 11 </command> |
12 <inputs> | 12 <inputs> |
13 <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/> | 13 <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/> |
14 <param name="aligner" type="select" value="mafft" label="Multiple sequence aligner" help="MAFFT is the original aligner Du Novo was published with in 2016. Kalign is much faster and has similar accuracy."> | 14 <param name="aligner" type="select" value="mafft" label="Multiple sequence aligner" help="MAFFT is the original aligner Du Novo was published with in 2016. Kalign is much faster and has similar accuracy."> |
15 <option value="kalign">Kalign2</option> | 15 <option value="kalign">Kalign2</option> |