comparison dunovo.xml @ 7:e7b88ffb8294 draft

planemo upload for repository https://github.com/galaxyproject/dunovo commit b'9101e88acb2d3dc022c47e0663fec1f6b9fa58a5\n'-dirty

6:23f5d9316694

<?xml version="1.0"?>
<tool id="dunovo" name="Du Novo: Make consensus reads" version="2.0.8">
  <description>from duplex sequencing alignments</description>
  <requirements>
    <requirement type="package" version="2.0.8">dunovo</requirement>
    <!-- TODO: require Python 2.7 -->
  </requirements>
  <version_command>dunovo.py --version</version_command>
  <command detect_errors="exit_code">
    dunovo.py --galaxy $phone --processes \${GALAXY_SLOTS:-1} --min-reads $min_reads --qual $qual_thres --qual-format $qual_format --cons-thres $cons_thres --min-cons-reads $min_cons_reads '$input' --dcs1 '$dcs1' --dcs2 '$dcs2'
    #if $keep_sscs:
      --sscs1 '$sscs1' --sscs2 '$sscs2'
    #end if
  </command>
  <inputs>

7:e7b88ffb8294

<?xml version="1.0"?>
<tool id="dunovo" name="Du Novo: Make consensus reads" version="2.0.9">
  <description>from duplex sequencing alignments</description>
  <requirements>
    <requirement type="package" version="2.0.9">dunovo</requirement>
    <!-- TODO: require Python 2.7 -->
  </requirements>
  <version_command>make-consensi.py --version</version_command>
  <command detect_errors="exit_code">
    make-consensi.py --galaxy $phone --processes \${GALAXY_SLOTS:-1} --min-reads $min_reads --qual $qual_thres --qual-format $qual_format --cons-thres $cons_thres --min-cons-reads $min_cons_reads '$input' --dcs1 '$dcs1' --dcs2 '$dcs2'
    #if $keep_sscs:
      --sscs1 '$sscs1' --sscs2 '$sscs2'
    #end if
  </command>
  <inputs>