comparison make_families.xml @ 9:fa563fa9b330 draft

planemo upload for repository https://github.com/galaxyproject/dunovo commit b'74b84167148cb0a0d7c6ac83123e8c957f85fe37\n'-dirty

8:658eefb99fd7

<?xml version="1.0"?>
<tool id="make_families" name="Du Novo: Make families" version="2.0.12">
  <description>of duplex sequencing reads</description>
  <requirements>
    <requirement type="package" version="2.0.12">dunovo</requirement>
  </requirements>
  <!-- TODO: Add dependency on coreutils to get paste? -->
  <version_command>make-consensi.py --version</version_command>
  <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output'
  </command>
  <inputs>
    <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/>
    <param name="fastq2" type="data" format="fastq" label="Sequencing reads, mate 2"/>
    <param name="taglen" type="integer" value="12" min="0" label="Tag length" help="length of each random barcode on the ends of the fragments"/>
    <param name="invariant" type="integer" value="5" min="0" label="Invariant sequence length" help="length of the sequence between the tag and actual sample sequence (the restriction site, normally)"/>
  </inputs>
  <outputs>
    <data name="output" format="tabular"/>
  </outputs>
  <tests>

9:fa563fa9b330

<?xml version="1.0"?>
<tool id="make_families" name="Du Novo: Make families" version="2.14">
  <description>of duplex sequencing reads</description>
  <requirements>
    <requirement type="package" version="2.14">dunovo</requirement>
  </requirements>
  <!-- TODO: Add dependency on coreutils to get paste? -->
  <version_command>make-consensi.py --version</version_command>
  <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output'
  </command>
  <inputs>
    <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/>
    <param name="fastq2" type="data" format="fastq" label="Sequencing reads, mate 2"/>
    <param name="taglen" type="integer" value="12" min="0" label="Tag length" help="Length of each random barcode on the ends of the fragments."/>
    <param name="invariant" type="integer" value="5" min="0" label="Invariant sequence length" help="Length of the sequence between the tag and actual sample sequence (the restriction site, normally)."/>
  </inputs>
  <outputs>
    <data name="output" format="tabular"/>
  </outputs>
  <tests>