comparison align_families.xml @ 11:0f8e0dc73d1d draft default tip

"planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty"

10:9dc43bf7d1db

<?xml version="1.0"?>
<tool id="align_families" name="Du Novo: Align families" version="2.15">
  <description>of duplex sequencing reads</description>
  <requirements>
    <requirement type="package" version="7.221">mafft</requirement>
    <requirement type="package" version="2.15">dunovo</requirement>
    <!-- TODO: require Python 2.7 -->
  </requirements>
  <version_command>align-families.py --version</version_command>
  <command detect_errors="exit_code">align-families.py $check_ids --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
  </command>
  <inputs>

      <param name="input" value="smoke.families.tsv"/>
      <output name="output" file="smoke.families.aligned.tsv"/>
    </test>
    <test>
      <param name="input" value="families.sort.tsv"/>
      <output name="output" file="families.msa.tsv"/>
    </test>
  </tests>
  <help>

11:0f8e0dc73d1d

<?xml version="1.0"?>
<tool id="align_families" name="Du Novo: Align families" version="3.0.2">
  <description>of duplex sequencing reads</description>
  <requirements>
    <requirement type="package" version="3.0.2">dunovo</requirement>
  </requirements>
  <version_command>align-families.py --version</version_command>
  <command detect_errors="exit_code">align-families.py $check_ids --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
  </command>
  <inputs>

      <param name="input" value="smoke.families.tsv"/>
      <output name="output" file="smoke.families.aligned.tsv"/>
    </test>
    <test>
      <param name="input" value="families.sort.tsv"/>
      <param name="check_ids" value="--no-check-ids"/>
      <output name="output" file="families.msa.tsv"/>
    </test>
  </tests>
  <help>