diff align_families.xml @ 2:a9cb6fb9ea94 draft

Update to Du Novo 0.7.6.

--- a/align_families.xml	Fri Feb 24 03:18:01 2017 -0500
+++ b/align_families.xml	Thu Aug 24 02:13:33 2017 -0400
@@ -1,15 +1,16 @@
 <?xml version="1.0"?>
-<tool id="align_families" name="Du Novo: Align families" version="0.7">
+<tool id="align_families" name="Du Novo: Align families" version="0.7.6">
   <description>of duplex sequencing reads</description>
   <requirements>
     <requirement type="package" version="7.221">mafft</requirement>
-    <requirement type="package" version="0.7.1">dunovo</requirement>
+    <requirement type="package" version="0.7.6">dunovo</requirement>
     <!-- TODO: require Python 2.7 -->
   </requirements>
-  <command detect_errors="exit_code">align_families.py -p \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
+  <command detect_errors="exit_code">align_families.py --galaxy $phone -p \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
   </command>
   <inputs>
     <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/>
+    <param name="phone" type="boolean" truevalue="--phone-home" falsevalue="" checked="False" label="Send anonymous usage data" help="Report helpful usage data to the developer, to better understand the use cases and performance of the tool. The only data which will be recorded is the name and version of the tool, the size of the input data, the time taken to process it, and the IP address of the machine running it. No parameters or filenames are sent."/>
   </inputs>
   <outputs>
     <data name="output" format="tabular"/>