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1 <tool id="plotPrediction" name="plot prediction" version="1.0.0">
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2 <description>shows scatterplot of a prediction vs true phenotype</description>
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3 <command interpreter="Rscript">
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4 plotPrediction.R $config
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5 </command>
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6
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7 <inputs>
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8 <param name="phenotype" type="data"
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9 label="true phenotype"
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10 />
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11
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12 <param name="predictedPhenotype" type="data"
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13 label="predicted phenotype"
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14 />
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15
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16 </inputs>
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17
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18 <configfiles>
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19 <configfile name="config">
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20 ## Desc: this file is sourced in encode wrapper script
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21 ## as means to pass all galaxy params to R
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22 "${predictedPhenotype}" -> predicted
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23 "${phenotype}" -> phenotype
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24 "${r2}" -> out
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25
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26 </configfile>
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27 </configfiles>
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28
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29 <outputs>
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30 <data format="pdf" name = "r2" />
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31 </outputs>
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32
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33 <help>
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34 draw R2 of prediction vs true phenotype
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35 </help>
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36 </tool> |
